LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g1799	ATGGGGGCTATAAAATCAGCCATGGGAGATGCAATCTTAACATCAGTATGGGTCTTCAGCCTCTCATCACAAAGGATTATCTCATCAGAGATATCTTCATTTCTTGGATTCAAACCATTCACACTTCCATCACTATTCCTCTCAACAATCATAAACTCCATCATAGTCTTCACCATAACCTCCATTGGAAGGCTCTTAGGTGGTGCAAGCTTCAACCCTTCATCCACAGTTTCATCCTACTTCTTAGGCCTAAGGCCAGATTCATCACTCTCATCATTGGCCATAAGGTTCCCTGCTCAAGCACTTGGTGGGGCCCTTGGTGCAAAAGGGTTACTTTCTGTGGTGCCCCCACAGTATAAGATTTTGCTGAAAGGTCCTTACTTGAAGGTGGATTTACACACTGGTGCTTTTGCTGAAGGAGCATTGGTTTTTGCACTTAACTTGGCTATACTCATTATTGTTATGAAGGGTCCTAAGAATGCTTTCTTGAAGGTTTATATGATTTCTTTGACAACTTTGACTTTGGCTATTTGTGGTTCTGGTTACACTGGACCTTCTATGAACCCTGCAAATGCATTTGGTTGGGCTTATATGTATAATAGGCATATGAATTGGGAGCTGTTTTATGTCTATTGGATTTGTCCTTTTATTGGGGCATTTTTTGCTGCTTTGGTTTATAAGGCTCTGTTTATGTCACCACCAGAGATGATGAAGAAGCAGAAGAAAGCTTGA	732	0.4126	MGAIKSAMGDAILTSVWVFSLSSQRIISSEISSFLGFKPFTLPSLFLSTIINSIIVFTITSIGRLLGGASFNPSSTVSSYFLGLRPDSSLSSLAIRFPAQALGGALGAKGLLSVVPPQYKILLKGPYLKVDLHTGAFAEGALVFALNLAILIIVMKGPKNAFLKVYMISLTTLTLAICGSGYTGPSMNPANAFGWAYMYNRHMNWELFYVYWICPFIGAFFAALVYKALFMSPPEMMKKQKKA*	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g1799	243	Gene3D	Glycerol uptake facilitator protein.	2	242	IPR023271	-
	Amo13g1799	243	Pfam	Major intrinsic protein	51	226	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1799	243	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	1	243	-	-
	Amo13g1799	243	SUPERFAMILY	Aquaporin-like	4	236	IPR023271	-
	Amo13g1799	243	PANTHER	AQUAPORIN SIP1-1	1	243	IPR044222	GO:0015250
	Amo13g1799	243	PRINTS	Major intrinsic protein family signature	52	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1799	243	PRINTS	Major intrinsic protein family signature	92	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1799	243	PRINTS	Major intrinsic protein family signature	169	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1799	243	PRINTS	Major intrinsic protein family signature	209	229	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g1799	Amo-Chr13	25819857	25822400	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g1799	1	243	Major Intrinsic Protein MIP	AT5G18290	41.803	2.52e-57	181

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g1799	K09875		-	gmx:100775829	305.834