Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1794 ATGGAGCTTCGTTCTCATCGTCGCCTTTCCCAAACCTCGCCTTCTGGAGCAGGGAGGGGGAAGCAACCGAGGGATACCACTGAAGGAGTTGAAACTAACGATATGGATGGAGATGCTTATGCAATATCTTCGGATTCCAAGTATGAAGATGCATTAGATGGGAACAGTGTTTTCGACTTGAATCAAGACCCAACTTTAAGCATTAGTGTTTCTGATATAATGGTTGATTACACTTCTGATTCATCTGATGGTAGCAACCATTTATACAAAAGGGGAAAGGCACAGTCCAAAAAGAAAAGAAAGACACACAACTTGAGAAATGAAGAACTGATTGATGTAGAGATTCAGCCAGCAGCTGTTGTCAATTTGGTTAATAACCGAAAGAAGAAAAAAACAAGGAAAAGCAAAAAGGGAGCATCTGACATAGTATTACTATGGCATGCTTGGGAAGAGGAGCAAGAAAGGTGGATCGATGAGAATTTATCAGCAGATGCTGACTTAGATCATCAAAATGAAGAAATGAATGAAACTGCTGAGCCATCCTCAGATCTGACTATGCCTTTGTTGAGGTACCAGAAGGAATGGTTAGCATGGGCTTTGAAGCAGGAAAGTTCTGTGTCAAGAGGAGGAATTCTTGCAGATGAGATGGGGATGGGGAAGACTATTCAAGCAATTACCCTAGTACTTGCTAAACGTGAATTCCAGCACATGATTTGTGAGCAAGATGAACCTGCACCTGTGGCAGGTTCATCAAGAGTCTTACCTGCTATCAAAGGAACACTTGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAATGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAGGTGCTGGTTTATCATGGGGCAAGGAGAGGAAAGAATGTTGAACAGTTATCTGAATATGATTTTGTAATAACAACCTACTCCATCGTGGAGTCTGAGTACAGAAAATATATGATGCCTCCTAAGGAAAAGTGCCAATATTGCGGAAAGTTATTTTACCTGAATAAGTTACCTTATCACCTGAGGTATTTTTGTGGACCTGATGCTGTGAGAACAGAAAAACAGTCAAAACAAATGAAGAAAAAGAAAAAGTTTGCTACAAAACAGAAGATAAAAGATCATGAGTATTGGAATGAAGAATTGGAACAGGATGGTTTTGACAAGAAAAAGAAAGAGAAAATGGGCTTGGGAATGGATGATTTAGATTCCACTGACAGGGAGAAATCATTTCTTCATGCTGTAAAATGGCAGCGGATCATATTGGATGAAGCACACTACATAAAGTCGAGACACTGTAACACTGCAAAAGCTGTTCTTGCCTTAGACTCTTCATACAGATGGGCGCTTAGTGGCACTCCCCTGCAGAACCGTGTTGGAGAGCTGTATTCTCTGGTTCGGTTTCTGCAAATAGTTCCTTATTCCTATTATTTCTGCAAGGACTGTGATTGCCGGGCTCTTGATCACAGCTCCTCTAAACAATGTTCAGCCTGTGGTCACAGTTCTGTTAGACATTTTTGTTGGTGGAACAAATATGTTGCCACACCAATTCAATCGTATGGATATGGTGATTATGGAAGAAGAGCTATGATACTGCTTAAGAACAAAATTTTAAAGAACATAGTTCTAAGGCGAACTAAAACAGGCAGGGCTGCTGATCTTGCACTACCACCTAGAATTGTTTCATTGAGGAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAGTTTAATACATATGTTGAGGAAAATACTTTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTTCGGCAGGCTGTTGATCATCCATATCTTGTGGTATATTCTCAAGCTACTGCAATGAGAGAAAGTAACTTGCCTAGTAATGGTAATGTTGAACAAGCTTGTGGCCTGTGTCATGAGCCAGTAGAAGATCCTGTTGTTACTTCTTGTGAGCATATCTTTTGCAAGGCATGCTTGATAGACTTTTCTGCTTCCTTAGGACAAGTATCATGCCCCACATGCTCTAAGTTACTTACTGTTGATTTAACTTCAAACAAGGATGTTGGGGTTCAGGCTAATAAGACAACCATTAAAGGTTTCAGATCCTCCAGCATTCTAAACAGAATTTGGCTTGAGAACTTTCAGACAAGCACTAAAATTGAGGCACTGAGAGAAGAAATCAGATTTATGGTTGAAAGGGATGGATCTGCAAAAGGGATTGTTTTTAGTCAATTCACGTCATTCCTGGATCTCATAAATTACTCCCTGCACAAGTCAGGTGTATCTTGTGTTCAATTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAGATTTACTGATGATCCAGGCTGCAAAATTTTCCTCATGAGCTTGAAGGCCGGTGGTGTTGCTCTCAATTTAACAGTTGCATCACATGTTTTCTTGATGGACCCTTGGTGGAACCCTGCTGTGGAGCGTCAGGCTCAAGACAGAATTCACAGGATAGGGCAATATAAGCCAATCAGAATCGTCAGATTTGTCATTGAAAACACAATTGAGGAGAGGATTTTAAAACTGCAAGAGAAAAAGGAACTAGTATTTGAAGGGACTATTGGCGGCTCCTCCGAGGCGCTAGGGAAATTGACGGAGGCTGACTTGAAATTCCTCTTTGTTACCTAA 2706 0.4076 MELRSHRRLSQTSPSGAGRGKQPRDTTEGVETNDMDGDAYAISSDSKYEDALDGNSVFDLNQDPTLSISVSDIMVDYTSDSSDGSNHLYKRGKAQSKKKRKTHNLRNEELIDVEIQPAAVVNLVNNRKKKKTRKSKKGASDIVLLWHAWEEEQERWIDENLSADADLDHQNEEMNETAEPSSDLTMPLLRYQKEWLAWALKQESSVSRGGILADEMGMGKTIQAITLVLAKREFQHMICEQDEPAPVAGSSRVLPAIKGTLVICPVVAVTQWVNEIDRFTLKGSTKVLVYHGARRGKNVEQLSEYDFVITTYSIVESEYRKYMMPPKEKCQYCGKLFYLNKLPYHLRYFCGPDAVRTEKQSKQMKKKKKFATKQKIKDHEYWNEELEQDGFDKKKKEKMGLGMDDLDSTDREKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYFCKDCDCRALDHSSSKQCSACGHSSVRHFCWWNKYVATPIQSYGYGDYGRRAMILLKNKILKNIVLRRTKTGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVEENTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQATAMRESNLPSNGNVEQACGLCHEPVEDPVVTSCEHIFCKACLIDFSASLGQVSCPTCSKLLTVDLTSNKDVGVQANKTTIKGFRSSSILNRIWLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTDDPGCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLFVT* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1794 901 MobiDBLite consensus disorder prediction 1 40 - -
Amo13g1794 901 MobiDBLite consensus disorder prediction 79 102 - -
Amo13g1794 901 Pfam SNF2-related domain 203 624 IPR000330 GO:0005524|GO:0140658
Amo13g1794 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 476 IPR014001 -
Amo13g1794 901 SMART ring_2 647 686 IPR001841 -
Amo13g1794 901 CDD DEXDc_SHPRH-like 188 549 - -
Amo13g1794 901 Gene3D - 190 333 IPR038718 -
Amo13g1794 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 725 IPR013083 -
Amo13g1794 901 Gene3D - 355 565 IPR038718 -
Amo13g1794 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 899 IPR027417 -
Amo13g1794 901 ProSitePatterns Zinc finger RING-type signature. 662 671 IPR017907 -
Amo13g1794 901 PANTHER - 411 898 - -
Amo13g1794 901 PANTHER - 105 378 - -
Amo13g1794 901 Pfam zinc-RING finger domain 647 688 IPR001841 -
Amo13g1794 901 SMART ultradead3 184 494 IPR014001 -
Amo13g1794 901 SUPERFAMILY RING/U-box 632 691 - -
Amo13g1794 901 CDD SF2_C_SNF 729 856 - -
Amo13g1794 901 ProSiteProfiles Zinc finger RING-type profile. 647 687 IPR001841 -
Amo13g1794 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 549 IPR027417 -
Amo13g1794 901 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 411 898 - -
Amo13g1794 901 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 105 378 - -
Amo13g1794 901 Gene3D - 566 899 IPR027417 -
Amo13g1794 901 SMART helicmild6 762 845 IPR001650 -
Amo13g1794 901 Pfam Helicase conserved C-terminal domain 731 845 IPR001650 -
Amo13g1794 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 727 891 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1794 Amo-Chr13 25756793 25764690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1794 119 901 RAD5 or RAD16-like Gene Family AT1G05120 68.072 0.0 1102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo13g1794 SNF2_N 9.8e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1794 K15083 - gmx:100786366 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1794 13 25756793 25764690 Amo13g1794 13 25756793 25764690 ECH