Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1790 ATGGAGTGGAGTAGAGGACACACTATAGGCCATGGATCCTCAGCTACCGTATCTATAGCCACCCGCCGTGACGGCTGCCGTGTATTCGCCGTGAAATCATCGGAGCTATGCAATTCAGAATCTTTACAAAGAGAACAGAGGATTTTATCTTCTCTATGCTCTCCTTATGTGGTTAATTTCAAAGGGAGTGACATAACCATGGAGAACAACAAGCTCTACTACAATCTCTTCATGGAGTACATGCCATTCGGAACCCTTTCCTCGGAAATTAACCGGCACGGCGGCCGGCTCGATGAGGCAAAAATTAAGACCTACACAAGGCAAATTGTGCAGGGGCTAGAGTATATACACTCTAAAGGGTTGGTACATTGTGACATAAAATGTTCCAACATCTTAATTGGCACCGAAGGCGCCAAGATTGGTGACTTGGGATGCGCCAAGAGTGTCGTCGATCCGCGAATCAGCGGCACTCCGATGTTGATGGCGCCGGAAGCGGTTCGGGGAGAGGATCAAGGGTGTGCTAGTGATATTTGGTCACTTGGGTGCACCATAATTGAAATGGCTAAAGGTGAAGCAGCGTGGCCTAATTTGTTGGACCCATTTTGTGTTCTTTATCACATTGCATATTCCGGTGAAGTTCCTGAGATTCCATGGTTTCTATCTGAAGAAGGTAAGGATTTCTTGGGGAAGTGTCTAAGGTGGAATCCAGAAGAGAGGTGTACCGCTACTCAACTTCTTAATCATCCTTTTCTCGGAGAATTCAATTCCAAGGTGGAATCAAATTCAACATCGCCAACAAGTATTCTTGAGCATGGGTTTTGGAGCTGTGTGGAAGAAGGTTCTCACACAACAAGAACAACAAGCCTTGGGGATTTGCCACCTGACAGGGTTAGAATGTTGGGTTTGTGTTCAGAGGAATCATGTTGGGCATCATGGAATGATGATGATGATGATGGGAACTGGATCACAATTAGAAGGAATGAGTGTGACTCATGGGGTGAAGGGGTTTTTGGTAATTTTGGGTCAGAGACAGCTTCTAGTAGTAATGGTGGTTTGGATCTGAAGGAGTTGGTGGAAAGCAATGTGAGTGGTAGAAATTGTAGTAAACAATAA 1113 0.4537 MEWSRGHTIGHGSSATVSIATRRDGCRVFAVKSSELCNSESLQREQRILSSLCSPYVVNFKGSDITMENNKLYYNLFMEYMPFGTLSSEINRHGGRLDEAKIKTYTRQIVQGLEYIHSKGLVHCDIKCSNILIGTEGAKIGDLGCAKSVVDPRISGTPMLMAPEAVRGEDQGCASDIWSLGCTIIEMAKGEAAWPNLLDPFCVLYHIAYSGEVPEIPWFLSEEGKDFLGKCLRWNPEERCTATQLLNHPFLGEFNSKVESNSTSPTSILEHGFWSCVEEGSHTTRTTSLGDLPPDRVRMLGLCSEESCWASWNDDDDDGNWITIRRNECDSWGEGVFGNFGSETASSSNGGLDLKELVESNVSGRNCSKQ* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1790 370 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Amo13g1790 370 Pfam Protein kinase domain 5 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1790 370 Gene3D Transferase(Phosphotransferase) domain 1 2 290 - -
Amo13g1790 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 334 - -
Amo13g1790 370 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1790 370 CDD STKc_MAPKKK 2 251 - -
Amo13g1790 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Amo13g1790 370 SUPERFAMILY Protein kinase-like (PK-like) 3 274 IPR011009 -
Amo13g1790 370 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 334 - -
Amo13g1790 370 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1790 Amo-Chr13 25616606 25617990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1790 1 327 MAP Kinase Kinase Kinase AT1G05100 49.123 3.02e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo13g1790 Pkinase 3.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1790 K20716 - gmx:100819665 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1790 13 25616606 25617990 Amo13g1790 13 25616606 25617990 ECH