Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1778 ATGGGAGGAGATGCTGGACTCTCCATGGATTCCTCCGATCCGATCCGGAGGTTCTTCCTTCGCAGTAATAGCCCTGTTATTCTCAACTCTTTTCCTGAACACAAGTGGAATATGAACCTCAACACGGATCATGAAACCGCCTCTTTTCAACAAGTCAACCTTATTAGTTCTTGTTCTTCGAATCACGATCATCACCACAACACGAGACAAGAGTTAGACTTCTTCGTCACTCACAACGACGACAACCTTATCGCCTCTTCTTCTTTCCCTGCCGCCGACCACGATGACAATCATCGTCATTCCTTGGAATTCAAAGTGAACACTGGTCTGAATCTTCTCACTACCAGCACTACGGAGGACGATCACGTAAATTTGCAAGACAGAAGAACTAAACTTGAGGAGGTAGGTGTAATTGAAGCGGAGATAGAGCGAGTGAAGGAGGAGAATGAGAGGATAAGGGAGATGATTGATGAGGCAAACAGTCATTACAGTGCGCTTCAGATGCACCACATGAATCTGATGAACAAGAGCAGTGATGATGAAAGAGTATTGGTTCCAAGGCAGTTTATGGATCTTGGCTTAGCAACAAATTCGCACAATTGTTCATCATCAAGATCAAGATCAAAATCACCATCAGGGAATAGTAGTGGTGGTGATGGAGAGAAGAAGAGAATGAAAAGAGAAGAAAGCCCGATGAGGGAAGAAGAAGCAAACAAAATAGAGAGGTCAAGTAGTCCAGCAAAACATAATCTTGACCAAGCTCACGAGGCCACTATGAGGAAAGCTAGAGTTTCTGTTAGAGCCAGATCAGAGGCACCTATGATAACTGATGGGTGTCAATGGCGAAAGTATGGACAGAAGATGGCTAAAGGAAACCCATGCCCTCGAGCTTATTATCGTTGCACCATGGCTTCCGGTTGTCCAGTTAGGAAACAGGTGCAAAGGTGTGCAGAGGATAGAACAGTGTTAGTGACAACATATGAAGGGAAGCACAACCACCCTTTGCCACCGGCAGCAATGGCTATGGCGCAAACAACTTCCTCAGCCGCAACAATGCTTCTTTCTGGTTCATCAATGTCAACCAATGACAACACCACCCTAATCAACAATGCAACAAACTTCTTAGCAACAACACTTCTTCCATCTTCTTCATCATCATCATCAGCTGCTACTTCAACCATGGCAACAATCTCAGCTTCAGCACCATTCCCAACTATCACATTGGACCTTACTCATGATGACTCCCCCAACAACAACAACAACCCTTTTCAGTTCCCAATAAGGCCTAGTACAATTCCACAAATACCCTTCAACATATTTGGTGGTAATAGTAGTAATAATAATAGCAATAACCAATCAAAGTTTTGTGGTCTACAAATGCCTAATAATAATAATAAAGATCATAGTAATAGTAGTAGTAGTAGTAACAATCTTGTTGATACAGTTGGTGCTGCAATTGCATCTGATCCAAACTTCACTGCTGCTTTGGTATCAGCTCTTAGCTCCTTTATTAGTGCTGCTGCTCCTACTCAACAAAACAACATTAGCAATAGCAATGACAATGGCAATGGCACACTCAACAACAATAGCTAG 1593 0.43 MGGDAGLSMDSSDPIRRFFLRSNSPVILNSFPEHKWNMNLNTDHETASFQQVNLISSCSSNHDHHHNTRQELDFFVTHNDDNLIASSSFPAADHDDNHRHSLEFKVNTGLNLLTTSTTEDDHVNLQDRRTKLEEVGVIEAEIERVKEENERIREMIDEANSHYSALQMHHMNLMNKSSDDERVLVPRQFMDLGLATNSHNCSSSRSRSKSPSGNSSGGDGEKKRMKREESPMREEEANKIERSSSPAKHNLDQAHEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCAEDRTVLVTTYEGKHNHPLPPAAMAMAQTTSSAATMLLSGSSMSTNDNTTLINNATNFLATTLLPSSSSSSSAATSTMATISASAPFPTITLDLTHDDSPNNNNNPFQFPIRPSTIPQIPFNIFGGNSSNNNSNNQSKFCGLQMPNNNNKDHSNSSSSSNNLVDTVGAAIASDPNFTAALVSALSSFISAAAPTQQNNISNSNDNGNGTLNNNS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1778 530 SMART WRKY_cls 275 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g1778 530 MobiDBLite consensus disorder prediction 511 530 - -
Amo13g1778 530 MobiDBLite consensus disorder prediction 195 217 - -
Amo13g1778 530 MobiDBLite consensus disorder prediction 436 476 - -
Amo13g1778 530 PANTHER OS05G0567200 PROTEIN 47 524 - -
Amo13g1778 530 Gene3D WRKY domain 260 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g1778 530 MobiDBLite consensus disorder prediction 408 428 - -
Amo13g1778 530 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g1778 530 Coils Coil 135 162 - -
Amo13g1778 530 MobiDBLite consensus disorder prediction 219 267 - -
Amo13g1778 530 SUPERFAMILY WRKY DNA-binding domain 268 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g1778 530 MobiDBLite consensus disorder prediction 195 272 - -
Amo13g1778 530 Pfam WRKY DNA -binding domain 277 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g1778 530 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 47 524 IPR044810 GO:0003700
Amo13g1778 530 MobiDBLite consensus disorder prediction 408 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1778 Amo-Chr13 25455330 25459166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1778 71 504 WRKY Transcription Factor Family AT1G62300 45.679 3.78e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g1778 WRKY 5.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1778 - - ahf:112737496 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1778 13 25455330 25459166 Amo13g1778 13 25455330 25459166 ECH
Amo08g1210 08 19931308 19933595 Amo13g1778 13 25455330 25459166 PCT
Amo13g1778 13 25455330 25459166 Amo08g1210 08 19931308 19933595 PCT