Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1765 ATGACTGATATAAGGAAGTGGTTCATGAAATCGCACGACAAGGGCAATGCCAATGCCTCCTCCAAGCCCGCCACCGATAAACCCCAGAATGACAAACCGGCGTCTGGAGGTCAAGAAAGTTCGGGGAGGAGGAAAACTAGCAAATATTTTTCTACAGACAAACAAAAGGCAAAAGATGAAAAAGAAACACTGGAGCTCCCTGCTAAACGAAAGAATATAAAGGACAGTGGAGAACTACCAGAGGCCCGTACTTCGAAGAAGATTCATGAAGCTGAAGAAGATGACGAAGATGACTATGCTTTKCCAAAAAMTAAAAARAGTTCAGCTCATGCCACTCCAACAAAGAAACTGAAGAGTGGATCTGGTAGGGGGATCCCGCAGAAATCTGTRGAGTTAGAAGAAAATGATGAAGATGACGAGAAAGAAGCTGTGGCATCAGTTAAATCTGCCGGAAGAGGTCGTGGTGGTAGAGGAGCATCGGCACAACCATCTGGTGGGAGGGGTAGAGGTGGTGGTGGTAGGGGTGGGTTCATGAATTTTGGAGAAAGAAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGATGCTCCTGACTGTTTAGCTGGCCTAACTTTTGTGATCAGCGGAACGCTGGATAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAGCGCCATGGTGGTCGTGTCACGGGATCAGTCAGCAAGAAAACGAATTATCTACTATGTGATGAAGATATTGGTGGACGRAAGTCTGAAAAAGCCAAAGAGCTTGGAACTAAATTTCTCACGGAGGATGGATTGTTTGATATGATTCGGGCATCAAAACCGGCAAAAGCTCCTTCACAAGAGCCCAAAAAGTCTGTCAATAATAAGCCTGCTACTAATGCATCACAGTCAAAAAGTCCCGCAAAAGCAGAACCTAAGCCCTCTCTATCTTCACGGCTGCCTTCTACCCAAGCTAAGCCAAAGACAGCATCTACTGTTCACTCTCCTTTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATGTGATAGGGAATCAGTCACTTGTTTCACAGCTCAGAAATTGGTTGAAAACTTGGAACGAGCAATTTCTTGGCACTGGCAGTAAAAAAAAGGGAAAAAAGCAGAACGAACCCAATTCCAAAAAAGCTGTGCTGTTAAGTGGAACCCCTGGTATAGGGAAAACTACTTCAGCAAAGCTTGTCTGTCAGGAGCTTGGTTTCCAGGCCATAGAGGTAAATGCTAGTGACAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGGATTAGTGGAAGCAATGCAAATTCAATCAAAGAACTTGTAACCAATGAGGCCCTTGGTGCAAATATGGATCGGTCAAAGCTTGCTAGAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTTAACTTCCGGAAACCTACAAAGCAACAGATGGCCAAGAGGTTGATGGATGTTGCAAAGGCAGAAAAGCTTCAAGTTAATGATATTGCTCTGGAGGAACTAGCAGTAAGAGTTAATGGAGATATGCGTATGGCACTGAATCAGTTACAATATATGAGTCTCTCTATGTCGTCTATAAATTACGACGATATCAGGCAGCGCTTTCTTACCAGCTCAAAGGATGAAGACATATCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTACGAAGATGAGAATGGATGACAGGATTAGTCTTAGCATGAGTGATCCGGATCTTGTTCCACTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTAGCTGKTAAGGATGACCAGGGGGTAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCAATTGCTGATGGGGATCTAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTGGCCTCGTGTATTATTCCTGCTTCATTGTTGCATGGGCAGAGAGAAATACTTGAACAGGGAGAGCATAATTTTAACAGGTTCGGCGGGTGGCTTGGAAAGAACTCAACGACAGGCAAAAACCTTAGGCTTATGGAAGATCTGCATGTCCACATRCTTGCTTCACGTGAATCTAGTTCAGGAAGGGATATTATCCGATTGGAATACCTTACCCTTCTCCTTAAACAATTAACAGAACCGCTACGATCTCTGCCCAAGGCTGAAGCTGTTGAGAAAGTCGTGGAATTTATGAATACATATTCTATCAGTCAGGAAGACTTCGATACTATTGTAGAGTTGTCAAAATTCAAGGGTCACCCTAATCCATTGGAAGGCGTACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAATCAAGGATGGTTCGAGCTGCGGATCTGGTGAATCTTCCTGGAATAAAGAAGGCCCCTAAGAAGCGCATTGCTGCTATTTTAGAACCAGCTGAAGAAGTAGCAGAGCAGGGCGAAGGTAACACGTTGGATGAGAGTGAAGAGGAGAACAATTCCGACACAGAGGAGTTGGAAGGCARCAACCCCGGYGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAACTCAAAGGGCATGCAAGTACAGTTRGAGCTGAAGGGTGYRGCGAATTCGAGTTCCAAGAAGGCATCTGGTGGCAAAGGTGGTGCACAGAAGGGTGGCCAAACTTCAAGGGCTGCTCCGAAAAGAAAGAGGTGA 2841 0.4393 MTDIRKWFMKSHDKGNANASSKPATDKPQNDKPASGGQESSGRRKTSKYFSTDKQKAKDEKETLELPAKRKNIKDSGELPEARTSKKIHEAEEDDEDDYAXPKXKKSSAHATPTKKLKSGSGRGIPQKSVELEENDEDDEKEAVASVKSAGRGRGGRGASAQPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEDAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPAKAPSQEPKKSVNNKPATNASQSKSPAKAEPKPSLSSRLPSTQAKPKTASTVHSPLMWTEKYRPKDPKDVIGNQSLVSQLRNWLKTWNEQFLGTGSKKKGKKQNEPNSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEALGANMDRSKLARTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKRLMDVAKAEKLQVNDIALEELAVRVNGDMRMALNQLQYMSLSMSSINYDDIRQRFLTSSKDEDISPFTAVDKLFGFNATKMRMDDRISLSMSDPDLVPLLIQENYINYRPSLAXKDDQGVKRMNLIARAAESIADGDLVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGEHNFNRFGGWLGKNSTTGKNLRLMEDLHVHXLASRESSSGRDIIRLEYLTLLLKQLTEPLRSLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLEGVQPAVKSALTKAYKEQSKSRMVRAADLVNLPGIKKAPKKRIAAILEPAEEVAEQGEGNTLDESEEENNSDTEELEGXNPGEKLKSELQSLNSKGMQVQLELKGXANSSSKKASGGKGGAQKGGQTSRAAPKRKR* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1765 946 Pfam ATPase family associated with various cellular activities (AAA) 391 490 IPR003959 GO:0005524|GO:0016887
Amo13g1765 946 CDD AAA 386 487 - -
Amo13g1765 946 Pfam BRCA1 C Terminus (BRCT) domain 199 274 IPR001357 -
Amo13g1765 946 Gene3D BRCT domain 174 276 IPR036420 -
Amo13g1765 946 SUPERFAMILY post-AAA+ oligomerization domain-like 595 740 IPR008921 GO:0003677|GO:0006260
Amo13g1765 946 MobiDBLite consensus disorder prediction 14 45 - -
Amo13g1765 946 Gene3D - 524 594 - -
Amo13g1765 946 CDD HLD_clamp_RFC 524 582 - -
Amo13g1765 946 Gene3D - 596 705 - -
Amo13g1765 946 MobiDBLite consensus disorder prediction 896 926 - -
Amo13g1765 946 MobiDBLite consensus disorder prediction 1 199 - -
Amo13g1765 946 MobiDBLite consensus disorder prediction 861 946 - -
Amo13g1765 946 PANTHER REPLICATION FACTOR C SUBUNIT 1 16 924 - -
Amo13g1765 946 Pfam Replication factor RFC1 C terminal domain 664 826 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Amo13g1765 946 MobiDBLite consensus disorder prediction 275 349 - -
Amo13g1765 946 CDD BRCT_RFC1 198 275 - -
Amo13g1765 946 ProSiteProfiles BRCT domain profile. 197 278 IPR001357 -
Amo13g1765 946 Gene3D - 335 523 IPR027417 -
Amo13g1765 946 SUPERFAMILY BRCT domain 196 278 IPR036420 -
Amo13g1765 946 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 16 924 - -
Amo13g1765 946 MobiDBLite consensus disorder prediction 286 334 - -
Amo13g1765 946 SMART AAA_5 387 525 IPR003593 -
Amo13g1765 946 PIRSF RFC1 1 926 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Amo13g1765 946 MobiDBLite consensus disorder prediction 46 104 - -
Amo13g1765 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 584 IPR027417 -
Amo13g1765 946 MobiDBLite consensus disorder prediction 181 198 - -
Amo13g1765 946 SMART BRCT_7 199 277 IPR001357 -
Amo13g1765 946 MobiDBLite consensus disorder prediction 867 884 - -
Amo13g1765 946 MobiDBLite consensus disorder prediction 373 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1765 Amo-Chr13 25271350 25279581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1765 1 906 Core DNA Replication Machinery Family AT5G22010 68.438 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1765 K10754 - gmx:100790070 1380.54