Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1759 ATGGAAACCATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCTTAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTAACAGTTAACATGGGAGCATCACTTCAACCRTTAATACCACCTCATCAAGAACATCATCATCAGTCACAGAAACAGCACCTAAGCTTTGAAGAATCAAGCAGCTGCAAAGAACTGGGATCATCATCTTCAAAATGTAACAAAATTGCGCCATTTGAGCCTGTAGAGAGTCATCAATCACMTAGGATTCCTCCCATTCGTCCTCCGGAGAAGAGACAACGTGTTCCATCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATCAAGGCCAGTAATCCAGATATTAGCCACAGGGAAGCTTTCAGCACAGCTGCTAAAAACTGGGCACATTTCCCTCATATTCACTTTGGATTAAAGATGGATGGCAATAATGACAAGCAAGCAAAGTTGGACCATAATAACGGTGAAGGAACTCAAAAGTCTAATAATGGATTCTACTGA 582 0.4158 METMMATERVCYVHCNFCNTILAVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQEHHHQSQKQHLSFEESSSCKELGSSSSKCNKIAPFEPVESHQSXRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKMDGNNDKQAKLDHNNGEGTQKSNNGFY* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1759 193 PANTHER PROTEIN YABBY 6-RELATED 5 193 IPR006780 GO:0007275
Amo13g1759 193 Gene3D High mobility group box domain 103 160 IPR036910 -
Amo13g1759 193 MobiDBLite consensus disorder prediction 102 121 - -
Amo13g1759 193 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 5 193 - -
Amo13g1759 193 MobiDBLite consensus disorder prediction 56 76 - -
Amo13g1759 193 Pfam YABBY protein 6 165 IPR006780 GO:0007275
Amo13g1759 193 MobiDBLite consensus disorder prediction 167 193 - -
Amo13g1759 193 SUPERFAMILY HMG-box 109 158 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1759 Amo-Chr13 25182679 25192924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1759 1 193 C2C2-YABBY Transcription Factor Family AT1G08465 61.140 4.21e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo13g1759 YABBY 2.3e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1759 K25796 - gmx:100500026 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0758 18 10677840 10685829 Amo13g1759 13 25182679 25192924 PCT
Amo08g1227 08 20116629 20119548 Amo13g1759 13 25182679 25192924 PCT
Amo13g1759 13 25182679 25192924 Amo18g0758 18 10677840 10685829 PCT
Amo13g1759 13 25182679 25192924 Amo08g1227 08 20116629 20119548 PCT