Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1742 ATGTTCAACGGAATGATGGATCCTGAGTTGATCAGAATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCTGATCTGATGAGGATGGCTTCAGAGAGCATGAAGAACATGAAGCCTGAAGACTTTAAACTCGCTGCAGAACAGTTAAAGCATACTCGTCCTGAAGATATGGCTGAGATCGGTGAGAAGATGGCTAATGCATCACCTGATGAAGTAGCAGCTATGCGCTCCCGTGTTGACGCACATATCAAATATCAATTGAGTGCAGCTGAGTTGTTGAAGAAGCAGGGCAATGAGCTTCATAACAAGGGGAAGTTCACAGATGCTTTGGAGAAGTATTCTCGCGCTAAAGAAAATATTAAAGAGATTCCCTCTTCTGAAAGTAGAAAACTTCGTTTGGCATGCTCACTCAACTTGATGTCCTGCTACCTGAGGACAAAGCAGTACAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGAATGCGATGCAAAGAATCTTAAGGCTCTTTATCGGAGAGGGCAAGCATATAAAGAACTGGGTTTACTAAGGGATGCTGTTGCTGATTTGAGTAAAGCACTTGAAGTGTCCCCTAATGATGATACAATTGAAGAGCTTTTAAGGGACACCAAGGAAATGTTGACAAAGGAAGGTGGTGACTGCGCTCCTGGAGGATTAGTAATCGAAGAAATCACTGAAGAAATTGAGAATGCGCCTTCTGGAAACAACAAAAGCTCTTCTTCAGAACAAAGGGTGGTTCAACCAAGAAAGTCCAGTGAATCCTCAAATAGTTCTAATACAGTAAATGGAAATCCAATAACAAATGCCGAGAGTATAGATAAGTTGAAAAATGATCCAGTAGCTATGAGATCTTTCCAAAACTTCATTTCAAATGCCGATCCTGCAACTCTGGCTTCTTTAAATCCTGGACAATCCAATGATATATCCCCAGAGATGATGAGAACTGCTACAAATATGATTGGAAAAATGTCTCCTGAGGAACTTCAAAAAATGCTTGAAATGGCTTCTTCATTCCAAGGGGACAACCCAATTTTAAGGGGAGGTTCCCCCAATTCTCCTTTCAACCCTGGATCAATTCCTCCCAACATATCACCTGATATGTTAAAAACAGCAAGTGATATGATAGGTAAAATGTCACCAGATGACCTTCAGAAGATGTTTGAAATGGCTTCCTCGTTGAACGGGAGAGGATCTGTTCCATTGTCAGCACCTGTAGACAATACTGAAAGAAGTTCTTCCCGGTCGGACTTACCATCCTCGAGTACTAGTGAAACTAGTGTTTCTGGAGAGTCAAGTTCTTCTCAAAATGTCTTCCCAAATATGAGAAATGCTTCTCAGCCGAACTTCCCTTCCTCGACCACAGATTTGCAAGAACAGATGAGAAATCAGATGAAGGACCCAGCTATGCGGCAGATGTTCTCATCAATGATTAAAAATATGAGTCCAGAAATGATGGCAAACATGGGCGAACAATTTGGTTTCAAGCTTTCACCCGAGGATGCAGCAAGAGCTCAGCAAGCCATGTCATCCTTATCGCCAGAGAGCTTGGATAAAATGATGGTTTGGGCAGACAGGGTTCAAAGAGGAGTTGAAGGTGCAAAAAAGACAAAGAACTGGCTGCTGGGGAAACCTGGCATGATCTTGGCAATATGCATGCTCATTTTGGCTATCATTCTTCATCGATTCGGCTTCATTGGTAGCTAG 1764 0.4257 MFNGMMDPELIRIAQEQMSRMSPAELARIQQQMMSNPDLMRMASESMKNMKPEDFKLAAEQLKHTRPEDMAEIGEKMANASPDEVAAMRSRVDAHIKYQLSAAELLKKQGNELHNKGKFTDALEKYSRAKENIKEIPSSESRKLRLACSLNLMSCYLRTKQYNECIKEGSEVLECDAKNLKALYRRGQAYKELGLLRDAVADLSKALEVSPNDDTIEELLRDTKEMLTKEGGDCAPGGLVIEEITEEIENAPSGNNKSSSSEQRVVQPRKSSESSNSSNTVNGNPITNAESIDKLKNDPVAMRSFQNFISNADPATLASLNPGQSNDISPEMMRTATNMIGKMSPEELQKMLEMASSFQGDNPILRGGSPNSPFNPGSIPPNISPDMLKTASDMIGKMSPDDLQKMFEMASSLNGRGSVPLSAPVDNTERSSSRSDLPSSSTSETSVSGESSSSQNVFPNMRNASQPNFPSSTTDLQEQMRNQMKDPAMRQMFSSMIKNMSPEMMANMGEQFGFKLSPEDAARAQQAMSSLSPESLDKMMVWADRVQRGVEGAKKTKNWLLGKPGMILAICMLILAIILHRFGFIGS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1742 587 MobiDBLite consensus disorder prediction 414 478 - -
Amo13g1742 587 Gene3D Tetratricopeptide repeat domain 89 231 IPR011990 GO:0005515
Amo13g1742 587 SMART tpr_5 146 179 IPR019734 GO:0005515
Amo13g1742 587 SMART tpr_5 180 213 IPR019734 GO:0005515
Amo13g1742 587 SMART tpr_5 103 136 IPR019734 GO:0005515
Amo13g1742 587 MobiDBLite consensus disorder prediction 249 291 - -
Amo13g1742 587 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Amo13g1742 587 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Amo13g1742 587 MobiDBLite consensus disorder prediction 249 292 - -
Amo13g1742 587 MobiDBLite consensus disorder prediction 424 478 - -
Amo13g1742 587 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Amo13g1742 587 PANTHER OUTER ENVELOPE PROTEIN 61 59 587 - -
Amo13g1742 587 SUPERFAMILY TPR-like 95 225 IPR011990 GO:0005515
Amo13g1742 587 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 59 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1742 Amo-Chr13 24963367 24968663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1742 93 227 Calmodulin-binding Proteins AT5G48570 34.752 3.00e-17 83.2