Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1739 ATGGGGTTTTTGTTGAAGGAAGCTTTGAAGACTCTCTGTGCTCGGCACCAGTGGTCTTATGCGGTGTTTTGGAAGATCGGATGTAATAATTCCAAGCTGTTAATCTGGGAAGATTGCTACTACGAACCCTTGCTGTCTCCTTTTCCGGCAAGCGTTGCCGGGGAGGGAAGCTGGTTTTCTTCGGAGTCTCAGTTGTCGCAGCTAGGAATTCAGGATGAGGACAGAGTCTGTTCTTTGATTAACAAAATGATGGTGAATAATTCAGTCAATATAGCTGGTGAAGGGATAATTGGACGGGCAGCATTTACGGGAAACTACCAGTGGATTCTATTGAACAATTTTACAAGAAATGCATATCCACCTGAGGTGTATACTGAGATTCATCACCAATTCTCAGCTGGAATACAGACAATAGTGGTTATTCCTGTGCTTCCGCATGGTGTTGTTCAACTTGGTTCTTTTTTACCGATAATGGAAAATATTGGATTTGTGAATGATGTGAAGAGCTTGATCTTACAATTGGGATGTGTTCCTGGTGCCCTTTTAGCTGATGATTACTCAGCAAAACTTTCTACCATAAGTCTTGCAAAACCTGCTAATGTCGGTATACCTGTGTCTGTTGATCCTCCAGTTATTACCCCAAACTGCCCTCCTTTGATAGCTGGTGGCTCGAACCAAGCAAGTAATTCATCTCATGTTCCAAAGTCTATTGTTCAACACATAAATAATTATGACGGTTCGATAGTGACGCCTCAAAGCCGTAACATAAACCAGATATCATCCAAATACCATAATGAACCTTGTAAACCTAATGACCACTCAATAACCAAAACAAACGTCAGTGGCCAACAAGAGAGTATGGTTGTGAAGGCTGAAGCTGAATTGATGCCATCAAATTTCAGTTCATGTATGCAAAAGCAATCTGGTTCTTATAATACAAGATCTGCATACAATGATTTAGCCAGTTTCCGCCAACCAAGTCTCGGTGATTGCAGCCTTAAATACATGGAACAGCAAATCTTATCTGGAGTTGGGAGACAAAGTCATGTTAGTCCTAATATGAACACATCAAGCACCTTAAATATGGCTCAACTGAAAACAAATAGCAGCCGTATTCTTGGATGTGTCCAGAGTTCTCCAAATTCTTCAGTTCTTGGAGGAGTCCCAACATCTGGTGGGATGACTAATCTTATGAGGACAGATATGATTAATGGGTCGGCTTCAAGCCTACCACAAAATGTTGGGGTTGGACTTCAAAATGATAGATCAACTAGAGCTGGCATGCATTCTGTGTCTAATTTGACCAATCAATCAGTAACCACTCACATGCCTTCAGAAGATTCTAATCAGAAGAATCATGCTGTTGATTTGAAGCGTGCTTATGATGCTCTGGCTTCGTTGGATCAAGGGCTAGATGATGTGATGCTTCAGGACTTTAAAATCCCATTTCTTCATCTTGAGGATCATGTATCCATGAACGATCAGATCTCGGGGTTTGTTGGTGATTGTCTCATTAAGGATGCTACTAGTCAACATATGATGGGAAATGCTAAACATGAAGAAGCTTGCACTCAACCTCCATCGAGTGACGACCTCTTTGATGTTTTAGGTGCAGATTTTAAAATGAAACTGCTGAATGGAAACTGGAATAAGTTGCTTGCTGATGAACCAGATGCCGGTGCTGAAAACTTAGATAACAAGCCAACATACATGAATATGCATGGAGCTCCACATTATAGTAGATCGATAAGCGAAACAATATCAAGCAGTGGTATCATCTCTGCCACCTGCACTGACAACCTCTTAGATGCTGTGATCTCAAGGGCTCAATCTGCTTCTGCCGGGAAACAGAATTCCGATGATATGTCATGCAGGACAACAGTGACAAGGACTAGTACCTCCTCAACTCCCTCTCCGGCCTGTAAACAAGTTCTGTTTGATGTTCCCAAGACGGGGGACAAGATAGGTTCAGCCGAAACCAGTTCTGCTAAGAACACTTCCATTTATGGATCTCAACTTAGTTCCTGGATTGAGAATGGGAGCAGTGTGAAGTGTGAGAACAGCGTTTCGACTGGATACTCTAAGAAGCCAGATGAAGGTAAATCAAACCGTAAAAGGCTCAAGCCTGGGGAGAACCCCCGCCCTCGACCCAAAGATCGCCAAATGATTCAGGATCGTGTGAAAGAGTTACGCGAAATTGTGCCAAATGGAGCAAAATGTAGCATAGATTCACTCTTGGAAAGGACTATTAAGCACATGCTTTTCTTGCAAAGTGTAACGAAGCACGCCGACAAGCTGAAACAAACTGGGGAGTCTAAGATTATTAGTAAGGAAGGTGGATTGCTTTTGAGAGATAATTTCGAGGGAGGAGCGACATGGGCGTATGAGGTTGGTTCACAGTCAATGGTTTGCCCTATCATAGTCGAGGATCTGAGTCCTCCGCGTCAGATGCTAGTTGAGATGCTTTGCGAGGAGCGCGGTTTCTTTCTCGAAATAGCTGACTTAATCCGAGGACTAGGCTTAACCATCTTAAAGGGTGTCATGGAAACTCGCAATGACAAGATTTGGGCGCGCTTTGCTGTTGAGGCAAACAGGGATGTAACAAGGATGGAAATATTCATGTCGCTGGTTCGTCTTTTGGAGCAAACAGTGAAGGGAAATGCATCTTCATCGAATGCAGTCGACAACATGATGGCTTATCATTCTTTTCCACAAGCTACCCAGATACCCGCGACCGGTATGCCTACTAGTTTGCAATGA 2760 0.4312 MGFLLKEALKTLCARHQWSYAVFWKIGCNNSKLLIWEDCYYEPLLSPFPASVAGEGSWFSSESQLSQLGIQDEDRVCSLINKMMVNNSVNIAGEGIIGRAAFTGNYQWILLNNFTRNAYPPEVYTEIHHQFSAGIQTIVVIPVLPHGVVQLGSFLPIMENIGFVNDVKSLILQLGCVPGALLADDYSAKLSTISLAKPANVGIPVSVDPPVITPNCPPLIAGGSNQASNSSHVPKSIVQHINNYDGSIVTPQSRNINQISSKYHNEPCKPNDHSITKTNVSGQQESMVVKAEAELMPSNFSSCMQKQSGSYNTRSAYNDLASFRQPSLGDCSLKYMEQQILSGVGRQSHVSPNMNTSSTLNMAQLKTNSSRILGCVQSSPNSSVLGGVPTSGGMTNLMRTDMINGSASSLPQNVGVGLQNDRSTRAGMHSVSNLTNQSVTTHMPSEDSNQKNHAVDLKRAYDALASLDQGLDDVMLQDFKIPFLHLEDHVSMNDQISGFVGDCLIKDATSQHMMGNAKHEEACTQPPSSDDLFDVLGADFKMKLLNGNWNKLLADEPDAGAENLDNKPTYMNMHGAPHYSRSISETISSSGIISATCTDNLLDAVISRAQSASAGKQNSDDMSCRTTVTRTSTSSTPSPACKQVLFDVPKTGDKIGSAETSSAKNTSIYGSQLSSWIENGSSVKCENSVSTGYSKKPDEGKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDSLLERTIKHMLFLQSVTKHADKLKQTGESKIISKEGGLLLRDNFEGGATWAYEVGSQSMVCPIIVEDLSPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMETRNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGNASSSNAVDNMMAYHSFPQATQIPATGMPTSLQ* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1739 919 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 919 IPR043561 GO:0003700|GO:0006355
Amo13g1739 919 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 707 756 IPR011598 GO:0046983
Amo13g1739 919 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 919 - -
Amo13g1739 919 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 170 IPR025610 -
Amo13g1739 919 MobiDBLite consensus disorder prediction 697 722 - -
Amo13g1739 919 CDD bHLH_AtLHW_like 711 780 - -
Amo13g1739 919 MobiDBLite consensus disorder prediction 687 722 - -
Amo13g1739 919 MobiDBLite consensus disorder prediction 611 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1739 Amo-Chr13 24896360 24902827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1739 529 904 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 56.104 3.00e-117 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1739 - - aip:107629784 1733.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0701 18 9584051 9589490 Amo13g1739 13 24896360 24902827 PCT
Amo13g1739 13 24896360 24902827 Amo18g0701 18 9584051 9589490 PCT