Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1737 GAATTTGTATGTTGTGATATACAGAGAATAATAATGGCAGAAACTGAGATTCCTGAATATTTTCTTTGCCCAATTTCCCTTGAGATGATGAAGGAGCCTGTGACTGCGGTAACAGGCATCACATACGAAAGAGAAAGCATTGAGCAATGGCTGCGGAAGGCGAAAGAGTGCGTTTGCCCCGTGACGAAGCAGCCATTGCCGCGAAGCTCGCAATATTTGACCCCAAATCACACTTTAAGGAGACTGATTCAGGCATGGAGTGAAGCAACTAATGCAGCTAGAGGCCACGGTGCTGATCATCAACAGATTCCAAATCCGCAGTTGGAGAAGGTGCAAGTTGAGAAGCTAGTGAAGGATCTTAAGGTTCCTCATAGGAATCAAAGAGCGCTGAAGAAGTTGCATGGTTTTGCCATGGAAAGTGAGAGGACTAGAACTTGCATGGCTGAAGCTGGTGTTGCTAATGCCATGGTTATGTTCATTAACCAGCGTTTCCAACAAGGTAAGAGTAAGACAATGTGCCTAGAAGAAGCTCTAAGAATTCTTCATCTTACTTGGAATATACCATCAAGGACCAACATGAAGGCTCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGCACCTTAACGTGCACAACAACAACGTTAAGATAGTAAACGAAGCAATGCCTTTATTGAAGTTGACAATTCAAAACACAAATTCAACCATCTTAGGGAACTTGAACTTCCAATTCTTCAAGGGAATGGTGAGAGTATTGGGAAAAAGAACAATATCTCAACAAGCCCTAAAATCCACCTTGCAAATCCTCATAGAAACATGCCCTTTGGGCAGGAATCGAAAGAGCATTGTCGAGTTGGGTGCAGTTTCAAACCTAATCGAACTTGAACTTGAAAAACCGGAGAAAAACATCTCCGAACATATATTCAACCTTCTAGCACATCTATGTTCATGTGCTGAAGGTAGAGAAATGTTTCTTAAACATGCCGCGGCAATAGCAATGGTTTCTAAGAGGATTCTTAGGGTTTCTTCCGCGACGGACGACCGGGCGATCCATATTTTATCGGTGATCGGAAAATATTCGGGATCAAGTGAGGTTGTTCTTGAGATGCTTAGGGTTGGTGCAGTGTCCAAGCTTTGCATGGTGATTCAAGCAGATTGTGCATCTTATTTGAAAGAGAAAGCAAGGGGTATACTTAGGTTGCATTCCAAAGTTTGGAGTGATTCACCTTGCATACAACTCTACTTATTAACTAGGTACCAAAGATAG 1281 0.4231 EFVCCDIQRIIMAETEIPEYFLCPISLEMMKEPVTAVTGITYERESIEQWLRKAKECVCPVTKQPLPRSSQYLTPNHTLRRLIQAWSEATNAARGHGADHQQIPNPQLEKVQVEKLVKDLKVPHRNQRALKKLHGFAMESERTRTCMAEAGVANAMVMFINQRFQQGKSKTMCLEEALRILHLTWNIPSRTNMKALVGENLDFINSLTWILHLNVHNNNVKIVNEAMPLLKLTIQNTNSTILGNLNFQFFKGMVRVLGKRTISQQALKSTLQILIETCPLGRNRKSIVELGAVSNLIELELEKPEKNISEHIFNLLAHLCSCAEGREMFLKHAAAIAMVSKRILRVSSATDDRAIHILSVIGKYSGSSEVVLEMLRVGAVSKLCMVIQADCASYLKEKARGILRLHSKVWSDSPCIQLYLLTRYQR* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1737 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 14 424 - -
Amo13g1737 426 Gene3D - 89 413 IPR011989 -
Amo13g1737 426 CDD RING-Ubox_PUB 21 64 IPR045210 -
Amo13g1737 426 SUPERFAMILY RING/U-box 14 92 - -
Amo13g1737 426 Pfam U-box domain 17 89 IPR003613 GO:0004842|GO:0016567
Amo13g1737 426 SUPERFAMILY ARM repeat 129 400 IPR016024 -
Amo13g1737 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 88 IPR013083 -
Amo13g1737 426 ProSiteProfiles U-box domain profile. 16 93 IPR003613 GO:0004842|GO:0016567
Amo13g1737 426 PANTHER WDSAM1 PROTEIN 14 424 IPR045185 GO:0061630
Amo13g1737 426 SMART Ubox_2 20 86 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1737 Amo-Chr13 24757439 24759751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1737 14 423 U-box Gene Family AT3G11840 41.099 2.67e-91 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1737 - - gmx:100778547 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0704 18 9684873 9686229 Amo13g1737 13 24757439 24759751 PCT
Amo13g1737 13 24757439 24759751 Amo18g0704 18 9684873 9686229 PCT