Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1731 CAGGCCCTGGGTTGTAGGTTGGCAGATGATCCCCATCCGCACTGGCTTATATGTTCGAGGCTTGGAGCAGGACGCCTTCGTCTCATCGGTCCCCGTCGTGTCGTCGGTCGCCGTCCGGTTCTCCGTCGAAGGTTCATAAAAGAATTATTTAGTCCTTGCTTAGCTTCGTATAAGGTTGTTGGTAGAATGGAGGAGGAAGATGTAGCCTCGTTAGTTCATGGTGCACCGGCCATGGCCGATGAAGTTTCCTTTGTCGGGAACGAAGAAGAACTAGTTTCCGATGAGCCATATGTTTGTGTAGGCGATGAACCTTCATCAGAGGCAAGTGAGGATGCGAATATGGACGGGTATTGTGGCTATAATGATGGTGATGATTTTTACGAAAGCTGGGAAGACAGAGGCATTGATGGGATTGCTGACTTTGGCCGAATTAACTTTAAAGAAATAAGTTTTGATGAGATGAGATTGCTACATTTTCCCGATCGACATGTAGCTTTTGCTTTCTACAATTTATATGCAAAAATGAATGGGTTCGCCGCAAGGAAGACCAGGCTAAGGCAAAATGCCAAGAAACTGGCGACACAACAGCAGTTTGTTTGCTTTAGGCAGGGGTTCAGAGAATTTGCCGCGGATAAGGAGGCATACGAACGTAAGCGGGAGCCTAAGCCTGAGACTAGATGTGGCTGTTTGGCGCAGATGCGTGTTCATCTACATTTGGAGAGTGGTAGATGGATTATTTCATACTTTGATAATGTTCACAACCATGAGATGCTCGACGGAACACTTACATTTATGCTCCCTGGTCATAGGAAGATGAATTCTACCGCAATTGAACAAATGAACATGATGTTGAGAGTCGGGATTAAAACACCACAGATATATTCAGCATTTGTGCATACTGCAGGGGGCTTCCAAAATATGAGATCTCGGGAAGCACAATCCGATATGCATAGCGTGGTTGGACACTTGGTGTTGCAAAGTCCGTTACATGATTTGGAAAGGTCTGCTGCAAAGTTACTAACGAGGGAGATATTTATCTTGTTTCGGCCCATGCTGTCCCGTGCATGTACATTAAAGGTCCGGTCTTGTACATTGACTCCGACATCGGACATATACACCATTTCACGGTGGGGCAATTCACACAACAACTGGCATGTTTCGCACTATCCCGAGGATTCAATATTTAAATGCTCTTGTTTAAGGATGGAATCCCTTGGAATACCATGCGATCACATTGTAGCTCTTCTTGTACATCTTGATTTCACGGAAATCCCAACAAGTCTTGTTTTGGAGAGGTGGTCTAAGAACGCTCGGTCGAAGGTGAGGCAATATGTTGAGAAGGGACCGTTTAGTTGGGACTCTATGGTAAGTTGTCGCAATTGGATGCTGAACGACCTATGTAGGGAGATGTGTGTGCTTGCTTCAGTGAGGGAGGATAAATTTGAAACAATGACTGAGAAGATACGCAGTGAGATCAATCGATTAAAGCATGACACCGAAGCTGGGCCTTCGACACCCGCGGTTGTTGGCCAATCATCCACACTCGAGGGGTGCGTTCAAAACCCACTTGTTGTGCGTCGCAAGAAGAGGCCAAAGAGGGACTCAGTTAACCGTACCTTGGTTAGGGGTGTGAGACGGTGTAGCATTTGTCATCGGGTTGGGCATAATCGAACTTCTTGCCAGTCAAATGTTTGGCAGGGCCAGCGGCAGCAGCCTAGCCACGAGGAAGACGTCGATGAAGATAACTACTACACTCTTAACTTTGGGGAGGAAGTTGATGATGTTTGTTCTTTAGAGTATGCTCATTATCATTCTCAACCCGTGGGGCAAGAGGAACACTTTGGCCGGTATGAAGAGGAGTTCCAAGTGCCATTGACGGATCCTTATTATAGTTGGCATGAGTAG 1905 0.464 QALGCRLADDPHPHWLICSRLGAGRLRLIGPRRVVGRRPVLRRRFIKELFSPCLASYKVVGRMEEEDVASLVHGAPAMADEVSFVGNEEELVSDEPYVCVGDEPSSEASEDANMDGYCGYNDGDDFYESWEDRGIDGIADFGRINFKEISFDEMRLLHFPDRHVAFAFYNLYAKMNGFAARKTRLRQNAKKLATQQQFVCFRQGFREFAADKEAYERKREPKPETRCGCLAQMRVHLHLESGRWIISYFDNVHNHEMLDGTLTFMLPGHRKMNSTAIEQMNMMLRVGIKTPQIYSAFVHTAGGFQNMRSREAQSDMHSVVGHLVLQSPLHDLERSAAKLLTREIFILFRPMLSRACTLKVRSCTLTPTSDIYTISRWGNSHNNWHVSHYPEDSIFKCSCLRMESLGIPCDHIVALLVHLDFTEIPTSLVLERWSKNARSKVRQYVEKGPFSWDSMVSCRNWMLNDLCREMCVLASVREDKFETMTEKIRSEINRLKHDTEAGPSTPAVVGQSSTLEGCVQNPLVVRRKKRPKRDSVNRTLVRGVRRCSICHRVGHNRTSCQSNVWQGQRQQPSHEEDVDEDNYYTLNFGEEVDDVCSLEYAHYHSQPVGQEEHFGRYEEEFQVPLTDPYYSWHE* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1731 634 ProSiteProfiles Zinc finger SWIM-type profile. 384 420 IPR007527 GO:0008270
Amo13g1731 634 Pfam SWIM zinc finger 397 419 IPR007527 GO:0008270
Amo13g1731 634 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 136 277 - -
Amo13g1731 634 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 310 441 - -
Amo13g1731 634 SMART 26again6 395 422 IPR006564 GO:0008270
Amo13g1731 634 Pfam FAR1 DNA-binding domain 168 258 IPR004330 -
Amo13g1731 634 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 136 277 IPR031052 GO:0006355
Amo13g1731 634 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 310 441 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1731 Amo-Chr13 24671961 24675651 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g1731 FAR1 1.8e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1731 - - ahf:112785710 377.096