Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1729 ATGGACTATTCAGAAATCGAGGTTCCTGCACCATTTCTATGCCCAATATCACTTCACCTAATGAGAGAGCCTGTTACTGTTTCAACAGGAATCACATATGATAGAGAATCCATAGAGAGATGGTTATTCTCATGCAAGAATTTCACTTGCCCTGTTACAAAGCAACAAATTTTGCAAACACAAGATCTTACTCCAAACCACACTCTTCAAAGGTTGATCCAAAATTGGTGCACTCAGAATCATGTCTCACTTGATGAAACGACTCAGCATGATTCTAGTTCAACCATTGAAAAAGCTCAAGTTGTGAAACTCTTGAATGAAGCAAAGAGGTTTTCACATGATGAGAAATTGAAGTTTCTCAAATGGATTAAAACAATTGCTCTGGAGAGTGAAAGTAACAAGCAGTGTTTGGAATCTGCAGGGGCAATAGATTTCTTGGCTTCAACCATGGATGAAGCAGATTCAACTTTGTTCATCATTGAAGCAGGTATTGAACTCTTGTTTAAATTGAATCCTTCAATATATCAGCTAAAGTATCTTATAAACAATGAAAAAATTCACTTTTTTGAGTCATTGTTTCATGTATTGAGACTTGGAAACCAAGAATCTAGAACTTATGCAACATTGCTATTGAAATCATCATTTGGGGTGGCCAATCCAACCCAATTGAGYTGTGTCAAAACCGAATATTTTGTCGAAATATCAAGAGTGATAAGGGACAAGATCTCACAAGAAGCTTCCAAGGCCGCGCTGAAGCTTCTTGTGGATCTTTGTTCCCGGGGCAGGAACCAGGTCAGAGCAGTCGAGGCYGGCTTAGTACTAAACCTCATTGATCTCCTCATTGATAGTAACAATATTTCCGAAARACGGATTTGTGAACTCATATTGATAGCTTTGGATAGGCTCTGCGGCTGCGCAGAAGGGCGCGCCGCCTTGTTGAGCCATGGTGCTGCTGTCGCCGYCATTTCGAAGAAGATTCTAAGGGTTTCTTGTGTTGCAAGTGATAGAGCTGTTAAGATTTTGGCCACAGTTTGTAGGTATTCAGCAACACTTAATTTGCTTCAAGAGATGTTGGTGGTTGGTGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAGTGGATAATGGTGCTTCCAATAAGGCTAAGGAGAGGGCTAGTGAGATACTTAAGTTGCATACAAAGGTTTGGAAGAATTCCCCATGTATTCCTGTTAATTTGCTTTCAAACTATCCATGA 1233 0.3998 MDYSEIEVPAPFLCPISLHLMREPVTVSTGITYDRESIERWLFSCKNFTCPVTKQQILQTQDLTPNHTLQRLIQNWCTQNHVSLDETTQHDSSSTIEKAQVVKLLNEAKRFSHDEKLKFLKWIKTIALESESNKQCLESAGAIDFLASTMDEADSTLFIIEAGIELLFKLNPSIYQLKYLINNEKIHFFESLFHVLRLGNQESRTYATLLLKSSFGVANPTQLSCVKTEYFVEISRVIRDKISQEASKAALKLLVDLCSRGRNQVRAVEAGLVLNLIDLLIDSNNISEXRICELILIALDRLCGCAEGRAALLSHGAAVAXISKKILRVSCVASDRAVKILATVCRYSATLNLLQEMLVVGAVSKLCLVLQVDNGASNKAKERASEILKLHTKVWKNSPCIPVNLLSNYP* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1729 410 SUPERFAMILY RING/U-box 4 83 - -
Amo13g1729 410 Gene3D - 95 396 IPR011989 -
Amo13g1729 410 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Amo13g1729 410 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Amo13g1729 410 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Amo13g1729 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Amo13g1729 410 PANTHER WDSAM1 PROTEIN 7 410 IPR045185 GO:0061630
Amo13g1729 410 PANTHER OS11G0573500 PROTEIN 7 410 - -
Amo13g1729 410 CDD RING-Ubox_PUB 12 55 IPR045210 -
Amo13g1729 410 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1729 Amo-Chr13 24644929 24646407 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1729 1 410 U-box Gene Family AT2G35930 48.662 1.97e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1729 - - gmx:100778012 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0742 18 10470138 10471529 Amo13g1729 13 24644929 24646407 PCT
Amo13g1729 13 24644929 24646407 Amo18g0742 18 10470138 10471529 PCT