Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1707 ATGGACTATTCAGAAATCGAGGTTCCTGCACCATTTCTATGCCCAATATCACTTCACCTAATGAGAGAGCCTGTTACTGTTTCAACAGGAATCACATATGATAGAGAATCCATAGAGAGATGGTTATTCTCATGCAAGAATTTCACTTGCCCTGTTACAAAGCAACAAGTTTTACAAACACAAGATCTTACTCCAAACCACACTCTTCAAAGGTTGATCCAAAATTGGTGCACTCAGAATCATGTCTCACTTGATGAAACGACTCAGCATGATTCTAGTTCAACCATTGAAAAAGCTCAAGTTGTGAAACTCTTGAATGAAGCAAAGAGGTTTTCACATGATGAGAAATTGAAGTTTCTCAAATGGATTAAAACAATTGCTCTGGAGAGTGAAAGTAACAAACAGTGTTTGGAATCTGCAGGGGCAATAGATTTCTTGGCTTCAACCATGGATGAAGCACATTCAACTTTGTTCATCATTGAAGCAGGTATTGAACTCTTGTTTAAATTGAATCCTTCAATATATCAGCTAAAGTATCTTATAAACAATGAAAAAATTCACTTTTTTGAGTCATTGTTTCATGTATTGAGACTTGGAAACCAAGAATCTAGAACTTATGCAACATTGCTATTGAAATCATCATTTGGGGTGGCCAATCCAACCCAATTGAGCTGTGTCAAAACCGAATATTTTGTCGAAATATCAAGAGTGATAAGGGACAAGATCTCACAAGAAGCTTCCAAGGCCGCGCTGAAGCTTCTTGTGGATCTTTGTTCCCGGGGCAGGAACCAGGTCAGAGCAGTCGAGGCCGGCTTAGTACTAAACCTCATTGATCTCCTCATTGATAGTAACAATATTTCCGAAAAACGGATTTGTGAACTCATATTGATAGCTTTGGATAGGCTCTGCGGCTGCGCAGAAGGGCGCGCCGCCTTGTTGAGCCATGGTGCTGCTGTCGCCGCCATTTCGAAGAAGATTCTAAGGGTTTCTTGTGTTGCAAGTGATAGAGCTGTTAAGATTTTGGCCACAGTTTGTAGGTATTCAGCAACACTTAATTTGCTTCAAGAGATGTTGGTGGTTGGTGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAGTGGATAATGGTGCTTCCAATAAGGCTAAGGAGAGGGCTAGTGAGATCCTTAAGTTGCATACAAAGGTTTGGAAGAATTCCCCATGTATTCCTGTTAATTTGCTTTCAAACTATCCATGA 1233 0.4023 MDYSEIEVPAPFLCPISLHLMREPVTVSTGITYDRESIERWLFSCKNFTCPVTKQQVLQTQDLTPNHTLQRLIQNWCTQNHVSLDETTQHDSSSTIEKAQVVKLLNEAKRFSHDEKLKFLKWIKTIALESESNKQCLESAGAIDFLASTMDEAHSTLFIIEAGIELLFKLNPSIYQLKYLINNEKIHFFESLFHVLRLGNQESRTYATLLLKSSFGVANPTQLSCVKTEYFVEISRVIRDKISQEASKAALKLLVDLCSRGRNQVRAVEAGLVLNLIDLLIDSNNISEKRICELILIALDRLCGCAEGRAALLSHGAAVAAISKKILRVSCVASDRAVKILATVCRYSATLNLLQEMLVVGAVSKLCLVLQVDNGASNKAKERASEILKLHTKVWKNSPCIPVNLLSNYP* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1707 410 PANTHER WDSAM1 PROTEIN 7 410 IPR045185 GO:0061630
Amo13g1707 410 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Amo13g1707 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Amo13g1707 410 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Amo13g1707 410 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Amo13g1707 410 Gene3D - 93 396 IPR011989 -
Amo13g1707 410 SUPERFAMILY RING/U-box 4 83 - -
Amo13g1707 410 PANTHER OS11G0573500 PROTEIN 7 410 - -
Amo13g1707 410 SUPERFAMILY ARM repeat 112 390 IPR016024 -
Amo13g1707 410 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1707 Amo-Chr13 24147916 24149286 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1707 1 410 U-box Gene Family AT2G35930 48.418 1.11e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1707 - - gmx:100778012 479.944