Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1703 GAATTTGTATGTTGTGATATACAGAGAATAATAATGGCAGAAACTGAGATTCCTGAATATTTTCTTTGCCCAATTTCCCTTGAGATGATGAAGGAGCCTGTGACTGCGGTAACAGGCATCACATACGAAAGAGAAAGCATTGAGCAATGGCTGCGGAAGGCGAAAGAGTGCGTTTGCCCCGTGACGAAGCAGCCATTGCCGCGAAGCTCGCAATATTTGACCCCAAATCACACTTTAAGGAGACTGATTCAGGCATGGAGTGAAGCAACTAATGCAGCTAGAGGCCACGGTGCTGATCATCAACAGATTCCAAATCCGCAGTTGGAGAAGGTGCAAGTTGAGAAGCTAGTGAAGGATCTTAAGGTTCCTCATAGGAATCAAAGAGCGCTGAAGAAGTTGCATGGTTTTGCCATGGAAAGTGAGAGGACTAGAACTTGCATGGCTGAAGCTGGTGTTGCTAATGCCATGGTTATGTTCATTAACCAGCGTTTCCAACAAGGTAAGAGTAAGACAATGTGCCTAGAAGAAGCTCTAAGAATTCTTCATCTTACCTGGAATATACCATCAAGGACCAACATGAAGGCTCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGGACCTTAACGTGCACAAAAACAACGTTAAGATAGTAAACGAAGCAATGCCTTTATTGAAGTTGACAATTCAAAACACAAATTCAACCATCTTAGGGAACTTGAACTTCCAATTCTTCAAGGGAATGGTGAGAGTATTGGGAAAAAGAACAATATCTCAACAAGCCCTAAAATCCACCTTGCAAATCCTCATAGAAACATGCCCTTTGGGTAGGAATCGAAAGAGCATTGTCGAGTCGGGTGCAGTTTCAGACCTAATCGAACTTGAACTCGAAAAACCGGAGAAAAACATTTCCGAACTTATATTCAACCTTCTAGCACATCTATGTTCATGTGCTGAAGGTAGAGAAATGTTTCTTAAACATGCCGCGGCAATAGCAATGGTTTCTAAAAGGATTCTTAGGGTTTCTTCCGCGACGGACGACCGGGCAATCCATATTTTATCGGTGATCGGAAAATATTCGGGATCAAAGGAGGTTGTTCTTGAGATGCTTAGGGTTGGTGCAGTGTCCAAGCTTTGCATGGTGATTCAAGCAGATTGTGCATCTTATTTGAAAGAGAAAGCAAGAGGTATACTTAGGTTGCATTCCAAAGTTTGGAGTGATTCACCTTGCATACAACTCTACTTATTAACTAGGTACCAAAGATAG 1281 0.4215 EFVCCDIQRIIMAETEIPEYFLCPISLEMMKEPVTAVTGITYERESIEQWLRKAKECVCPVTKQPLPRSSQYLTPNHTLRRLIQAWSEATNAARGHGADHQQIPNPQLEKVQVEKLVKDLKVPHRNQRALKKLHGFAMESERTRTCMAEAGVANAMVMFINQRFQQGKSKTMCLEEALRILHLTWNIPSRTNMKALVGENLDFINSLTWILDLNVHKNNVKIVNEAMPLLKLTIQNTNSTILGNLNFQFFKGMVRVLGKRTISQQALKSTLQILIETCPLGRNRKSIVESGAVSDLIELELEKPEKNISELIFNLLAHLCSCAEGREMFLKHAAAIAMVSKRILRVSSATDDRAIHILSVIGKYSGSKEVVLEMLRVGAVSKLCMVIQADCASYLKEKARGILRLHSKVWSDSPCIQLYLLTRYQR* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1703 426 PANTHER WDSAM1 PROTEIN 14 424 IPR045185 GO:0061630
Amo13g1703 426 SUPERFAMILY ARM repeat 129 401 IPR016024 -
Amo13g1703 426 CDD RING-Ubox_PUB 21 64 IPR045210 -
Amo13g1703 426 SUPERFAMILY RING/U-box 14 92 - -
Amo13g1703 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 88 IPR013083 -
Amo13g1703 426 Pfam U-box domain 17 89 IPR003613 GO:0004842|GO:0016567
Amo13g1703 426 Gene3D - 89 413 IPR011989 -
Amo13g1703 426 ProSiteProfiles U-box domain profile. 16 93 IPR003613 GO:0004842|GO:0016567
Amo13g1703 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 14 424 - -
Amo13g1703 426 SMART Ubox_2 20 86 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1703 Amo-Chr13 24068869 24071262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1703 10 424 U-box Gene Family AT2G35930 38.663 6.51e-92 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1703 - - gmx:100778547 552.362