Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1680 ATGATCGAAATGACATCCAATAACCCTTACGAAATCATAGACGATGATGATGAGGGGTTTGATTGGGAAGCAGCTGCAAGAGAAATCGACGTCGTTTGCCAACAAAGCAAGTGTGTTAGCAGCAGTGGCTGTGATGCAAACGGGAAGGCGAAGGCGAAGGGAAACAATGGCGACTCATCCCGGCAATCCACTCTCGATCAGTTTGTGGTCACTGCCAAGAAGGAAGCCCCAGTGCTTCAGGCCCAACACGAAGAAGAAGTCCCAACCTCCGCCATCCACCACATTGATGCCGACGCAGCCAAAACTTGGATATACCCTGTTAATGTTCCTCTCCGCGACTATCAATTTGCCATCACCAAATCCGCACTTTTTTCAAACACATTGGTGGCATTGCCAACAGGATTAGGCAAGACACTTATCGCTGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGAAAAATAGTCTTTACTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAATATTGTTGGAATACCCCAGAAATGGACAATTGATATGACGGGTCAAATAAGTCCTCCCAAAAGAGCTTGTTTTTGGAAAACAAAGCGGGTTTTCTTTGTCACCCCACAAGTGTTGGAGAAAGATATTCATTCTGGTATATGCTTAGTAAAGTACTTGGTGTGTTTGGTTATTGATGAAGCTCACAGAGCTACAGGAAATTACTCTTATTGTGAAGCTGTTCGTGAGCTGATGGCTGTACCAGTGCAACTTAGAATATTAGCATTAACTGCAACCCCAGGATCAAAGAAGCAGACAGTCCAGCATGTTATTGATAATCTTCATGTCTCCAAGCTTGAATATCGCAGTGAGGTTAACCATGACGTTATCCCATATGTTCATAACAGGAAGATAGAGTTGGTAGAGGTTGCAATGGGCCAAGATGCTGCAGAAATAAATGATAAGCTTTTGGATGTCATACGTCCAATAGTAGCAAGGCTTAATGATATTGGGGTCATTCAGAATAGAAATTATCGTACTTTGAGCCCTTGTACGTTACTTGAAATAAGGGAAAAGTTTCGTCAAGGACATAGGCAAGACCTTTCTAATATCAACAATGTAGATGTCGAAGGGTATTTTGGGGTTCTTATCACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAGTAAGGCCAGCACAAGAAATGCTTGAAAGAAAATTGAAGCAAGGATTTTTCGCAAAATATATGAGTAAAAATGAAGTTATGCTGAAAGCAAGGCAACTGATGCAGCAAAGCTTGTCTCATGGAGCATCTAGTCCTAAGCTCTCCAAAATGCTAGAAGTACTACATGATCATTTCAAAACCAATGATCCCAAAAGTTCAAGGGTAATTATCTTCTCCAATTATAGAGAAAGTGTCAGGGACATTATGGGTGCACTTGGAAACATTGGGGAACCAGTCAGAGCTACAGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCCGGTGCCTACAATGTTATTGTTGCTACATCAATCGGTGAAGAAGGTCTAGATATAATGGAAGTTGATCTTGTCATATCTTTTGATGCAAATATTTCACCACTTAGAATGATTCAGCGAATGGGAAGAACTGGAAGAAAGCATGATGGACGAGTTGATATCCTTTGGTTTCCAGTTTTGTGTATTGGCTTGTTAACAATGAGAAGCAATCAATCTTGTGAAGGGTCAGAGTTGAACGGCTACTTGCGGAAGAAGGCAAAGAGCAAGGGTATAAGTAAACACATGCGAAATGGGGGTGTAGATAGCTTCAACTTTCATCCTAGTCCAAGAATGATTCCCCATGTCTTCAAACCTGAAGTTCAATATGTTGAGATGTCAATTGAGAAATTTATTCCCCGTGAAAAGAATGTGAAAGATGTCCCTCTTCCAATTTCTCCATCCAAAGATAAACTCACTGTTGCTGAAATGGATTTACTTAAAATGTATTTCCATTCTACTGAGGAAAATACAAGTAGATTGTCTCTCATTGCCTTTCCTTACTTTCAAACCTTTCCTTCTAGAGTTCATAAAGTGAACCATTCCCTTAGAACAATGATGCTTATAGACGCAATGCAGCATTTGCAAGGATTAGAAACGTGTCCAGGAAATGACAAAACTACTCTTCAGGAAGGTTCGTGTTTAGGAAATAGCAAGCCGTTTTCCATTTCTGAGGCCAAACATGACACTGAATCATGCTATAGGCATACAATGGAAAGGAATGTTGACACCGTAAATTGTATGAACTTGGATTCCCATCCTTTGAGGATTAAAACCAAAGATACTATTGATCTAACTATACAAGAAGATAGTACTTTCGATGACTTGATTGAGCATGAAGAGGATTCACTCCAGGGTGATGAGATAGTTCCCGAGACTCCGGTTGCTAATAAAAGTGCATCAAATGGAGGAGATGATGCTGGTGAAACGACCAACCTTTTGGTCAAGACTTCATTGTTTCCAGAAGATGTATGCATTAATGGCATTAGAGAAGGAGAATTTAGTCCTCGCTTAACTGATTTCATTACAAGTGGTGTTGTTCCAGAGTCTCCAGTTGATGATGAACAAGAGAAATCAAGAGGCAAGTCTGTAATTCGAGACTGTATTTTGCCTGTTCGACTCCACGAAGAACAGGATACATGTCCCTTGAGTTCTATGCGAAGTGAAAAAGTTGTAATTGAGGGCAGTACTGGAAAGAATGTCTCTGATTCTCCAGTAGATAATGGAACTCGAACTCCTTTACTTGAGCTGAAGAATTCTGCAATTAAAAGACGACGCATCATTATTTCCCAAACTGAGGAAGGTCACTCACACATGTCTGACCCAAGCTTCAGGGAAGAATCACATTTAAGCTCTGGTAAAATGCCTGGAACTGTAAGTATTCAACCTTTGCGCAAATTTAAAAGGTTGCGGAAAGCTGCAGATGGTGACAGCAAAGCTAATCAGGAAAACAATGATCCCATCCGATATAAGCATGTTCAAAGTCATTTTGGTAAAAGGAAATCAACAAATGATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTTTCTGCAGAGGCAAATGTATCTAGTGACGAAGATGGAGAAGATGATGTTTCTTATGACAGTTTCATTGATGACAGGACAAACCCTATAGGAGAAAGTCAGCCTGAAGTTAGTAGAGTGGACATGATGGCAATTTACAGGCGTTCTTTGCTTAGTCAAACGCAGATAAATGGAAGTTACAGCTCTTCTGCCATGTTCAGCCCTGACAGTGTTACTAATGGAAGTGGGGGCTCTTCAGGCAAGACAGTAATGAGTCATGTTCATGGCAACTGCATAGACCAAGAAAAAGTGCCATCAACTAGTTCCCTTACAGGAAACGTTACAAGTCGTAAAAGATTGTCCCTTTATCATTCAGGAGGACACCTTCCAACTATGAACCTTGAACAAGAATTTGCACTTCAATCAAAGAAAGACTTGGTGGATGCCCCTGATTTTACTGTGGATTATCAATGTGATGATCAATTTTATAACGACCTTGATCTTGATGAGTTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAATTAGGTTTGTCAACTCAGAAGCAAGATGCAATCCCTCTACCTCCCTCTCTGAAGGAAGATAGCTTTTGGGCTCCATCGTTTGACCTCGGCATATGA 3762 0.4086 MIEMTSNNPYEIIDDDDEGFDWEAAAREIDVVCQQSKCVSSSGCDANGKAKAKGNNGDSSRQSTLDQFVVTAKKEAPVLQAQHEEEVPTSAIHHIDADAAKTWIYPVNVPLRDYQFAITKSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFTAPSRPLVMQQIEACHNIVGIPQKWTIDMTGQISPPKRACFWKTKRVFFVTPQVLEKDIHSGICLVKYLVCLVIDEAHRATGNYSYCEAVRELMAVPVQLRILALTATPGSKKQTVQHVIDNLHVSKLEYRSEVNHDVIPYVHNRKIELVEVAMGQDAAEINDKLLDVIRPIVARLNDIGVIQNRNYRTLSPCTLLEIREKFRQGHRQDLSNINNVDVEGYFGVLITLYYIHKLLSSHGVRPAQEMLERKLKQGFFAKYMSKNEVMLKARQLMQQSLSHGASSPKLSKMLEVLHDHFKTNDPKSSRVIIFSNYRESVRDIMGALGNIGEPVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVDILWFPVLCIGLLTMRSNQSCEGSELNGYLRKKAKSKGISKHMRNGGVDSFNFHPSPRMIPHVFKPEVQYVEMSIEKFIPREKNVKDVPLPISPSKDKLTVAEMDLLKMYFHSTEENTSRLSLIAFPYFQTFPSRVHKVNHSLRTMMLIDAMQHLQGLETCPGNDKTTLQEGSCLGNSKPFSISEAKHDTESCYRHTMERNVDTVNCMNLDSHPLRIKTKDTIDLTIQEDSTFDDLIEHEEDSLQGDEIVPETPVANKSASNGGDDAGETTNLLVKTSLFPEDVCINGIREGEFSPRLTDFITSGVVPESPVDDEQEKSRGKSVIRDCILPVRLHEEQDTCPLSSMRSEKVVIEGSTGKNVSDSPVDNGTRTPLLELKNSAIKRRRIIISQTEEGHSHMSDPSFREESHLSSGKMPGTVSIQPLRKFKRLRKAADGDSKANQENNDPIRYKHVQSHFGKRKSTNDVRDFIEEEAEVSAEANVSSDEDGEDDVSYDSFIDDRTNPIGESQPEVSRVDMMAIYRRSLLSQTQINGSYSSSAMFSPDSVTNGSGGSSGKTVMSHVHGNCIDQEKVPSTSSLTGNVTSRKRLSLYHSGGHLPTMNLEQEFALQSKKDLVDAPDFTVDYQCDDQFYNDLDLDELEAQAISLHKKKLGLSTQKQDAIPLPPSLKEDSFWAPSFDLGI* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1680 1253 Gene3D hef helicase domain 315 436 - -
Amo13g1680 1253 MobiDBLite consensus disorder prediction 39 62 - -
Amo13g1680 1253 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 286 IPR014001 -
Amo13g1680 1253 MobiDBLite consensus disorder prediction 963 980 - -
Amo13g1680 1253 CDD DEXDc_FANCM 109 290 IPR044749 GO:0005524
Amo13g1680 1253 Pfam Type III restriction enzyme, res subunit 124 268 IPR006935 GO:0003677|GO:0005524|GO:0016787
Amo13g1680 1253 CDD FANCM_ID 318 425 - -
Amo13g1680 1253 CDD SF2_C_FANCM_Hef 442 575 - -
Amo13g1680 1253 SMART helicmild6 478 568 IPR001650 -
Amo13g1680 1253 SMART ultradead3 107 307 IPR014001 -
Amo13g1680 1253 Gene3D - 107 301 IPR027417 -
Amo13g1680 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 576 IPR027417 -
Amo13g1680 1253 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 444 619 IPR001650 -
Amo13g1680 1253 MobiDBLite consensus disorder prediction 1050 1066 - -
Amo13g1680 1253 PANTHER FANCONI ANEMIA GROUP M PROTEIN 19 1217 IPR039686 GO:0006281|GO:0043138
Amo13g1680 1253 MobiDBLite consensus disorder prediction 963 1080 - -
Amo13g1680 1253 MobiDBLite consensus disorder prediction 1000 1046 - -
Amo13g1680 1253 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 19 1217 - -
Amo13g1680 1253 Pfam Helicase conserved C-terminal domain 450 567 IPR001650 -
Amo13g1680 1253 Gene3D - 437 578 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1680 Amo-Chr13 23354538 23363880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1680 417 566 Eukaryotic Initiation Factors Gene Family AT3G13920 27.632 2.16e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1680 K10896 - gmx:100820078 1472.99