Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1677 ATGGCTTTCACTGCGACTCCTCAGATTTTGTTACACAATCCCATATTAGGAAGAGGAGCAAGGTGGTTGAGAGGGAGAGTAACACCATCCACAAACACCGATAATAATAATAACATTAGTTTGCAGGTGCGGGCTTCCAAGGGCCCTGGCAACAAAAGAAGAGCACCCCCTTCCCCTGGAGTGGACACAAGAATCCACTGGCAAAATGAAAATGAAGGTTGGGTTGGAGGTAGTAACAAACAACAATCCACCGCAGACAATAAGAACCCTAAGAACCTCTTAGGAGAATCATTTGCTGATTTGCTCAGCGCTTCCTCAGGTTCCCATTACGAATTCTTAGGAGTATCGGCAGATGCGGATTTAGAAGAAATCAAAACAGCTTACCGGAGATTATCAAAGGAGTACCATCCAGACACAACTTCTCTGCCTCTCAAATCTGCTTCAGAAAAATTCATGAAACTCAGGGAGATCTACGATGTTCTTAGCGACGAAGAGACTCGAACGTTCTACGATTGGACTCTGGCTCAAGAGGCTGCAAGCCGCCAAGCAGAAAAGATAAAAATGAGATTAGAGGATCCTTATGAGCAACAACTCAGAAGCTATGAATCTGTTCCAGACATGGTTGACCGTCTTGGTGGGAAGAATATGAAGCTTAGCGATCAAGCTGTTTCTGCCCTCACTATTGATGTCTTCATCATTGTTTTTGCCATTTGTTGCATCATTTATGTAACAATATTCAAAGCACCATATTATTATTAG 759 0.4308 MAFTATPQILLHNPILGRGARWLRGRVTPSTNTDNNNNISLQVRASKGPGNKRRAPPSPGVDTRIHWQNENEGWVGGSNKQQSTADNKNPKNLLGESFADLLSASSGSHYEFLGVSADADLEEIKTAYRRLSKEYHPDTTSLPLKSASEKFMKLREIYDVLSDEETRTFYDWTLAQEAASRQAEKIKMRLEDPYEQQLRSYESVPDMVDRLGGKNMKLSDQAVSALTIDVFIIVFAICCIIYVTIFKAPYYY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1677 252 PRINTS DnaJ domain signature 146 166 IPR001623 -
Amo13g1677 252 PRINTS DnaJ domain signature 128 143 IPR001623 -
Amo13g1677 252 PRINTS DnaJ domain signature 110 128 IPR001623 -
Amo13g1677 252 Pfam DnaJ domain 109 171 IPR001623 -
Amo13g1677 252 SUPERFAMILY Chaperone J-domain 106 176 IPR036869 -
Amo13g1677 252 MobiDBLite consensus disorder prediction 26 91 - -
Amo13g1677 252 ProSitePatterns Nt-dnaJ domain signature. 151 170 IPR018253 -
Amo13g1677 252 SMART dnaj_3 107 166 IPR001623 -
Amo13g1677 252 Gene3D DnaJ domain 96 195 IPR036869 -
Amo13g1677 252 ProSiteProfiles dnaJ domain profile. 108 174 IPR001623 -
Amo13g1677 252 MobiDBLite consensus disorder prediction 26 45 - -
Amo13g1677 252 CDD DnaJ 109 163 IPR001623 -
Amo13g1677 252 MobiDBLite consensus disorder prediction 72 91 - -
Amo13g1677 252 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 31 250 IPR044618 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1677 Amo-Chr13 23322512 23323715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1677 109 176 C2H2 Transcription Factor Family AT1G74250 38.889 5.71e-09 54.3