Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1644 ATGACTCCAGTGAATTTGGCAGGGCAGTTCGGAGACACCACATACACCAAGGTTTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAATACTTTGAGCAATTCGGTGAGATCTTGGAAGCTGTTGTCATCACTGACAAAGCCACCGGAAGATCCAAAGGCTACGGTTTTGTCACGTTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTAATTGATGGAAGAAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACACCAAAGCATGGAGGAAGTGGAAGGAACTTTAGGGTAATGGGGTCTTTCCAGACCGGGTTTGGAGGGGGAGTGGGATCAGCTTTTCCATCGGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCATATAACGTTTATGGGTACTCTCCTTACTCACCGGATTACACTTACCCCACGAGCTACTACAGTGTGTATGGAGGTGCAGCAACAGCACAGTACCCAGTGTATGGAACGGGACATGCTGGAGGGATGATGACGGGTGCCGGGGCAGCAGCGGCGGCGGCAGCAGCCACCGCGTTTTATCCGTATATGCAGTACGGAGGAGAAGGGAGTGGCGGAGGTGGATCAAGCGGCGGGAGCTATACTACTTCAGGGCAGGGTTATGGTGTGAATTATCCGCCTCATCAACTGTTTCAGTATTCTCCGATTGCTTCAACCGGTGGCTATGCTCAGCACTATGCAACTCCCATGTCCCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACAATGGCTCTTCAAGCTCCAATTCCTCATCGCTAG 855 0.5158 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGSGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGGAATAQYPVYGTGHAGGMMTGAGAAAAAAAATAFYPYMQYGGEGSGGGGSSGGSYTTSGQGYGVNYPPHQLFQYSPIASTGGYAQHYATPMSLAPSPALQSGVTMALQAPIPHR* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1644 284 PANTHER OS01G0876800 PROTEIN 1 279 - -
Amo13g1644 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Amo13g1644 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Amo13g1644 284 Gene3D - 7 112 IPR012677 -
Amo13g1644 284 SMART rrm1_1 17 89 IPR000504 GO:0003723
Amo13g1644 284 CDD RRM_RBM24_RBM38_like 16 91 - -
Amo13g1644 284 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Amo13g1644 284 PANTHER BOULE-RELATED 1 279 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1644 Amo-Chr13 22614928 22621673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1644 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 5.65e-14 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1644 13 22614928 22621673 Amo13g1644 13 22614928 22621673 ECH