Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1626 ATGGCGAGGAGCGGCGGCCTGAGTGGGAGAGACGCGGCGGCTATGCAGGACTGCATGGAGGTGCTGGCTGATTCCGTGGAGGAGCTCACAAAATCGATTGGAGAAATGAGTCATTTGAGGACAAGTAATTTTGAAGGAACAATGAGTGATGTTCAAACTTGGGTCAGCGCTGCTTTGACCGATGATACCACCTGCACTGATGGCTTCCAACAGACCCCTAGTTCTGTCGCCGAAGATGTTAAGACCGCCGTCCGTGGCCGCGTCGTCGAGGTGGCGCAACTCACTAATCCTTTTCTGCTCTGCAACACTTCACTCGGCCTCGCCTTTAAGGCGGCTCGCTCCGCCTCCTCCACCGTCTCCAAGATCCTCAAGAACAATAGTAGCAGCCTCACGCCGCCGGCCAAAGCCGTGGTTCGTGACTGCTACGGCAACCTCAAAGATTCCGTTGGGCAGATAAAAGATTCTATTTCTGAAATGGGGAACTTGTATGAGAGTAGCGACAAAGATTTCAAGATGAGTAACGTAAAGACATGGGTGAGTGCTGCTATAACGAATTATAATACGTGCTCGGATGGATTTGAAGAACAGAGTGTGGATGGTGATGTTAGAGATAAGATCAATAAGCTTGTTTTGAATGCTGCGAGGATGACTAGTAATGCATTGTATTTCATCAACCACCTCGTATATTGA 690 0.4957 MARSGGLSGRDAAAMQDCMEVLADSVEELTKSIGEMSHLRTSNFEGTMSDVQTWVSAALTDDTTCTDGFQQTPSSVAEDVKTAVRGRVVEVAQLTNPFLLCNTSLGLAFKAARSASSTVSKILKNNSSSLTPPAKAVVRDCYGNLKDSVGQIKDSISEMGNLYESSDKDFKMSNVKTWVSAAITNYNTCSDGFEEQSVDGDVRDKINKLVLNAARMTSNALYFINHLVY* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1626 229 TIGRFAM PME_inhib: pectinesterase inhibitor domain 96 227 IPR006501 GO:0004857
Amo13g1626 229 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 94 IPR006501 GO:0004857
Amo13g1626 229 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 96 227 IPR035513 -
Amo13g1626 229 Pfam Plant invertase/pectin methylesterase inhibitor 11 96 IPR006501 GO:0004857
Amo13g1626 229 Pfam Plant invertase/pectin methylesterase inhibitor 100 221 IPR006501 GO:0004857
Amo13g1626 229 PANTHER PECTINESTERASE INHIBITOR-LIKE 2 96 - -
Amo13g1626 229 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 5 97 IPR035513 -
Amo13g1626 229 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 95 IPR035513 -
Amo13g1626 229 Gene3D Invertase/pectin methylesterase inhibitor family protein 96 228 IPR035513 -
Amo13g1626 229 CDD PMEI-like_3 95 227 - -
Amo13g1626 229 CDD PMEI-like_3 1 95 - -
Amo13g1626 229 SMART PMEI_2 2 85 IPR006501 GO:0004857
Amo13g1626 229 SMART PMEI_2 87 223 IPR006501 GO:0004857
Amo13g1626 229 PANTHER 21 KDA PROTEIN-LIKE 95 227 - -
Amo13g1626 229 PANTHER 21 KDA PROTEIN-LIKE 2 96 - -
Amo13g1626 229 PANTHER PECTINESTERASE INHIBITOR-LIKE 95 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1626 Amo-Chr13 22138823 22148564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1626 1 71 Carbohydrate Esterase AT3G14310 28.767 1.63e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1626 - - aip:107634201 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1626 13 22138823 22148564 Amo13g1626 13 22138823 22148564 ECH