Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1623 ATGATGAATATGAGGAAAATATTCTTGACACTATTATTGCTATCATCAATCTTCACAATTGCAGCATCAAGTAAGAGATCATCATCTCATCAAAAATCAAACGTGGATTGGTGGTGCAACCGAACACCACACCCTGCACCATGCAAGTACTACATGAGGCAAAGCCACTACAACCATTATCACAGGTTCAAGCACAGAACCGAGTTCCGTTCCGTTCTACTCAACGTGGCTCTAGACAAAGCACTCTTCATGCAAAAACAAGCACACTCTTTGCCAATCCAGAACACCACTATGAAGCAGAAAACCGTGTTCGGCGATTGCTTGAAGCTCTACGACAACACCGTCTTCCACCTCAACCGCACCATTCAAGGCCTCAAATACCATCAAACAAGAAACTGTACGGCTTTCGATGCACAAACATGGCTCAGCACTGCACTCACCAACATCGAAACCTGCAAGAAATGGGCCAATGCAATGAAGATCTCGGCCCTCACTGATCCGAGTTCATGCCCCAGCATCAACGTGTCTGAGATTATAAGCAACACTCTGGCTGTGAATTCAGTGTTCTTGAAATATCAGAGAGATCATTTAACGGAGGACTACACGGAGGACGCGTTTCCGAGTTGGTTTTCGGTGACGGACAGAAGGCTGCTGCAGGATTCAGGCGTGAAGGCTAACCTTGTGGTGGCCAAAGACGGTTCGGGACACTTTAGGAGCGTGCAGGCGGCGATTGATGCGGCTGCGAAGAGGAGGTTGAAGACGAGGTTCGTGATTCACGTGAAGAGAGGGGTTTATAGAGAGAATATTGAGGTTGATAAGACGAACGATAATATCATGCTGGTTGGTGATGGCACGAGAAATACCATTATTGCCAGTGGAAGAAGCGTTCAACAAGGCTATACCACCTATAGCTCCGCCACTGCAGGAATTGATGGACTTCACTTCATTGCACGTGACATCACCTTCATGAACACGGCGGGCCCACTCAAGGGTCAAGCCGTGGCGCTCCGATCCGCCTCCGATCTCTCCGTCTTCTACCGCTGCTCCATAATTGGATACCAAGACACCCTCATGGCTCACGCCCAGCGACAATTCTACCGAGCTTGTTACATCTACGGCACAGTTGACTTCATCTTTGGCAACGCCGCCGTTGTTTTCCAAAACTGCGTCATCCTCGCAAGAAAGCCCAATAATGGCCAGGCCAACATGATCACGGCCCAAGGTCGCGGTGACCCATTCCAAAACACAGGTATCTCATTCCACAATTGTCAGATACGGGCCGCACCCGACCTCAAGCCCCTTGTCAACCAATATAAGACATTCTTGGGCCGGCCCTGGCAGCAATACTCAAGAGTTGTCGTTATGAAAAGTTACATAGATAGCTTGGTAAGCCCAACGGGCTGGTCTCCATGGGGCAACACTAATTTTGCTCAGAGTACGTTGTTCTACGGAGAATATAAGAATTTTGGGCCTGGATCTTCTACAAAGAACAGGGTTCGGTGGCCTGGTTATCATGTTTTGACAAGCCCGGCCCAGGCTTCACCCTTTACGGTTAATAGCCTCCTTGCTGGCGGCACGTGGTTACCGGCTACTGGCGTGCCATTTACGTCTGGCCTTTGA 1620 0.492 MMNMRKIFLTLLLLSSIFTIAASSKRSSSHQKSNVDWWCNRTPHPAPCKYYMRQSHYNHYHRFKHRTEFRSVLLNVALDKALFMQKQAHSLPIQNTTMKQKTVFGDCLKLYDNTVFHLNRTIQGLKYHQTRNCTAFDAQTWLSTALTNIETCKKWANAMKISALTDPSSCPSINVSEIISNTLAVNSVFLKYQRDHLTEDYTEDAFPSWFSVTDRRLLQDSGVKANLVVAKDGSGHFRSVQAAIDAAAKRRLKTRFVIHVKRGVYRENIEVDKTNDNIMLVGDGTRNTIIASGRSVQQGYTTYSSATAGIDGLHFIARDITFMNTAGPLKGQAVALRSASDLSVFYRCSIIGYQDTLMAHAQRQFYRACYIYGTVDFIFGNAAVVFQNCVILARKPNNGQANMITAQGRGDPFQNTGISFHNCQIRAAPDLKPLVNQYKTFLGRPWQQYSRVVVMKSYIDSLVSPTGWSPWGNTNFAQSTLFYGEYKNFGPGSSTKNRVRWPGYHVLTSPAQASPFTVNSLLAGGTWLPATGVPFTSGL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1623 539 SMART PMEI_2 30 185 IPR006501 GO:0004857
Amo13g1623 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 187 IPR006501 GO:0004857
Amo13g1623 539 PANTHER PECTINESTERASE 2 538 - -
Amo13g1623 539 SUPERFAMILY Pectin lyase-like 223 538 IPR011050 -
Amo13g1623 539 Pfam Plant invertase/pectin methylesterase inhibitor 34 184 IPR006501 GO:0004857
Amo13g1623 539 Pfam Pectinesterase 226 524 IPR000070 GO:0030599|GO:0042545
Amo13g1623 539 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Amo13g1623 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 190 IPR035513 -
Amo13g1623 539 Gene3D - 220 539 IPR012334 -
Amo13g1623 539 PANTHER PECTINESTERASE 2 538 - -
Amo13g1623 539 CDD PMEI-like_3 37 191 - -
Amo13g1623 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1623 Amo-Chr13 22080750 22082948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1623 20 539 Carbohydrate Esterase AT3G47400 58.491 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1623 K01051 - gmx:100816908 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1623 13 22080750 22082948 Amo13g1623 13 22080750 22082948 ECH