Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1622 ATGGAGAATATGAATAGTTTTTGTCATGTTCCCCCGGGTTTTAGATTCCACCCCACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTTAGTTCAAGGAAGATTGAGCTTGATGTAATCAAAGATGTTGACCTCTACAAAATTGAGCCATGGGACCTTCAAGAGATATGCAGGATAGGAAGAGAAGAGGAGAATGAATGGTATTTCTTTAGCCACAAGGATAAGAAGTATCCAACAGGAACAAGAACAAATAGGGCAACAGCAGCTGGGTTTTGGAAAGCAACGGGAAGAGACAAAGCTATATATTCAAAGCATGATCTCATAGGGATGAGGAAGACATTAGTCTTTTATAAAGGTAGAGCTCCTAATGGACAAAAATCGGATTGGATCATGCACGAATATCGCCTTGAAACCGATGAAAATGCCGCACCACAGGCAATATTCAAGAAGAGAGTAACAACGATGCGTAAAGTGATGATGAGAGAGCATGATGAGTCTCCTAATTCTTCTTGTTGGTACGATGAGCAAGAATTGATGATGATGGAATCGCCAACAAAGCAACAATCCTCTATTCTTCTTCATCAATCCACCAATAACCATTCCAATTTGATGCAGCTACCACCGTATCCTCTCATCAAGAAAGAGCTTCATCACCCATCATCATCATACCCCTTCCTTCAGCTTCCACTCTTAGAGTCTCATCAACAATCTGCTGCTGCACCTTCCTCCATTTCTGAACAACTCATCATGCCACCACCAATTGGAGGAGGAGAACAAGTCCCAAGTTTTCAGTCATTCTTCAATAATGAACAACAAGAAGTAGGAGTTCTTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGATAATCATGCATCCTCTAATAGTATTGTACAAGATCTCACACAGGAAATTGTTATGGTGCCTCACAATGATGCTGCATCAACATCAAACTCCCTCACCTCCCCAATTGATTTGTGGAAATAG 1008 0.4087 MENMNSFCHVPPGFRFHPTDEELVDYYLRKKVSSRKIELDVIKDVDLYKIEPWDLQEICRIGREEENEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENAAPQAIFKKRVTTMRKVMMREHDESPNSSCWYDEQELMMMESPTKQQSSILLHQSTNNHSNLMQLPPYPLIKKELHHPSSSYPFLQLPLLESHQQSAAAPSSISEQLIMPPPIGGGEQVPSFQSFFNNEQQEVGVLDWRVLDKFVASQLSQDDNHASSNSIVQDLTQEIVMVPHNDAASTSNSLTSPIDLWK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1622 335 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
Amo13g1622 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 311 - -
Amo13g1622 335 ProSiteProfiles NAC domain profile. 10 163 IPR003441 GO:0003677|GO:0006355
Amo13g1622 335 SUPERFAMILY NAC domain 7 144 IPR036093 GO:0003677|GO:0006355
Amo13g1622 335 Gene3D NAC domain 19 170 IPR036093 GO:0003677|GO:0006355
Amo13g1622 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 7 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1622 Amo-Chr13 22041745 22042949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1622 4 335 NAC Transcription Factor Family AT1G12260 53.090 5.66e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g1622 NAM 9.1e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1622 13 22041745 22042949 Amo13g1622 13 22041745 22042949 ECH