Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1612 ATGGAGGCTATCGATTCCAACCCTAACCCTACGCCTCCGCTTTCTTCATCAGAGACCCTGAATTCATACGATCCATCATTGCATCTTCACAATTCCGAACCTCACTATTCAGATGCTGCCAACACTACTGATTCTGGCCACCCGAACACATCGGAGAACGGCCAGGCAGCCGTCGGTGCTGATGTGAATTACCCGCCTCAGGTCGCCAAACCTTTGATATCCGAGAACGGGTTGACCGGTACCACCACCCGCAGTGGCACCGACAAGGACCAATCCGGCGGCGAGGAAGAGACAACCAGCAGGCGCCGACGTAGGAGCCGGTGGGACCCGCAGCCTGATTCCAACGACCAGAGCAACAGCTGTGGCGGTGGCGATGCCGATTCTGGCACCAAAGTGAGGAAGAGGAAGTCGCGGTGGGCTGATGACGATCCGAAGCCAGTGATTCAGCTTCCTGATTTCATGGGAGGTATTGAATTCGATCCTGAGATTCAAGCTTTGAATAGTAGGCTACTTGAGATTAGTAGAATGTTGCAATCGGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCTCGATCCCCTTCACCTGAACCTATATATGATAACATGGGAATTAGGATTAACACTAGGGAGTATCGTGCTCGTGAGAGATTGCAGAAGGAGAGGCAGGAGATTATATCTCAGATTATTAAGAAAAACCCTGCCTTTAAGCCTCCAGCTGATTATAGGCCTCCAAAGCTTCAGAAGAAGCTCTTTATACCGATGAAAGAATACCCTGGTTACAATTTCATAGGGCTGATTATTGGCCCTAGAGGTAACACGCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGGGGTAAAGGATCAGTGAAAGAAGGTAGGCTGCAACAGAAGAGGGATTTAAAACCTGATCCTTCGGAGAATGAGGATTTGCATGTTTTAGTGGAGGCAGAGACACAGGAATCGCTTGATGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTATTGAATGAGCACAAGAGGCAACAGCTTAGGGAACTTGCAGCCTTAAATGGGACGATTAGGGACGAAGAGTATTGTCGATTGTGTGGTGAACCTGGTCATCGTCAATATGCTTGTCCTACAAGGACTTCAACATTTAAGAGCGAGGTTGTCTGTAAGCATTGTGGCGATGGTGGACATCCAAGCATCGATTGCCCGGTAAAGGGTGCTACTGGGAAGAAGATGGACGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGTACTGTTCCTGAATCTGCAACAAAGCAAACTCCTACGCTAGCGATTGGTCCTGGCAACTCTGCAAGTAATCCTCCTTGGGCAAACAACAGTGCTGCTTCAACTGGTGGTAGTACAGCACACCCTGGCTTAGGTTCTGCTACGATTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCACCCACTCTTGATGATGATGGTTTGATCCAACTGTTTCAACAATTTGGTGAGATTGTTATGGCCAAAGTTATCAAGGATCGAGTGTCAGGTTTAAGTAAAGGATATGGATTTGTGAAGTATGCTGATATTCAAATGGCAAATAATGCAATTTCGGCCATGAATGGTCATCGCCTTGAGGGCCGAACCATTGCTGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGTCCTCCAGCATCTTCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTTGGTGCCTATCCATCCCAGCAATATGCTGCTGGTGGTCCAATTGGTAGTGCGCCCCCTCCAAGTTATGGTGGCCAGCCTCTGCCTCCCTATGGTGTTCAATATCCGCCTGTCCAGACAGGCCCTCCTGGTGCCACATCCCAACCTGCATCCAGCAGTGAAGTTCAGCAGAGTTACCCTCCTGGAGTGCAGTCTGACAATAGTACCACTACTCAGTCTGTACCCTCTATATATGGGAACTCGGTGCCTTCAATGCCTCCACCACCTCAACCTACTTACCCTGCATCATATGGTTATCCTCCATACTACAATGCAGTTCCTCCACCACCTCCCCCTTCTGCGCCTGGGCCTCCCTCTACTTCAGACCAGTCCCACATTGGGAATGTGCCTTGGGCCAGTAATCCTCCGGTACCACCTCCTGCTTCATCTGCAGAGAAGACAACATATGGTGCAGATCAATCACAGGGAATAGGCAATGTGCCTTGGGCCACAAATCCACCAATTCCTCCGCCTGCTTCATCGGCTGCAGATTCAGAGTATGAGAAGCCTGATGTTTCTTGGAGCTCTAACCTCTTGCCATGTCTTTCTTCGAATTGCAGTGTGGCAGGTGATCATTCATATGGTCCTGTGAGGAGGGCAAATATTGTTGGGCATAAGATCGAGGCTGAGATGAAATTGATTGTTGGTAGGGTTTTGAGTCGTTTTCACATGCTTCATTTAGCTGTGTTGCTGGGTGAAGATAGATATAGTAGATGA 2517 0.4891 MEAIDSNPNPTPPLSSSETLNSYDPSLHLHNSEPHYSDAANTTDSGHPNTSENGQAAVGADVNYPPQVAKPLISENGLTGTTTRSGTDKDQSGGEEETTSRRRRRSRWDPQPDSNDQSNSCGGGDADSGTKVRKRKSRWADDDPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLFIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTPTLAIGPGNSASNPPWANNSAASTGGSTAHPGLGSATIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRVSGLSKGYGFVKYADIQMANNAISAMNGHRLEGRTIAVRVAGKPPQPVVPPGPPASSVPTYPVPSQPLGAYPSQQYAAGGPIGSAPPPSYGGQPLPPYGVQYPPVQTGPPGATSQPASSSEVQQSYPPGVQSDNSTTTQSVPSIYGNSVPSMPPPPQPTYPASYGYPPYYNAVPPPPPPSAPGPPSTSDQSHIGNVPWASNPPVPPPASSAEKTTYGADQSQGIGNVPWATNPPIPPPASSAADSEYEKPDVSWSSNLLPCLSSNCSVAGDHSYGPVRRANIVGHKIEAEMKLIVGRVLSRFHMLHLAVLLGEDRYSR* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1612 838 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 487 556 IPR000504 GO:0003723
Amo13g1612 838 SMART c2hcfinal6 367 383 IPR001878 GO:0003676|GO:0008270
Amo13g1612 838 SMART c2hcfinal6 393 409 IPR001878 GO:0003676|GO:0008270
Amo13g1612 838 MobiDBLite consensus disorder prediction 627 667 - -
Amo13g1612 838 MobiDBLite consensus disorder prediction 89 111 - -
Amo13g1612 838 MobiDBLite consensus disorder prediction 1 28 - -
Amo13g1612 838 SUPERFAMILY Retrovirus zinc finger-like domains 364 410 IPR036875 GO:0003676|GO:0008270
Amo13g1612 838 MobiDBLite consensus disorder prediction 128 145 - -
Amo13g1612 838 MobiDBLite consensus disorder prediction 607 624 - -
Amo13g1612 838 SMART rrm1_1 486 559 IPR000504 GO:0003723
Amo13g1612 838 ProSiteProfiles Type-1 KH domain profile. 261 333 - -
Amo13g1612 838 MobiDBLite consensus disorder prediction 35 57 - -
Amo13g1612 838 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 54 609 - -
Amo13g1612 838 SUPERFAMILY RNA-binding domain, RBD 482 574 IPR035979 GO:0003676
Amo13g1612 838 MobiDBLite consensus disorder prediction 74 88 - -
Amo13g1612 838 MobiDBLite consensus disorder prediction 564 581 - -
Amo13g1612 838 ProSiteProfiles Zinc finger CCHC-type profile. 368 382 IPR001878 GO:0003676|GO:0008270
Amo13g1612 838 Gene3D - 160 238 - -
Amo13g1612 838 Gene3D - 451 567 IPR012677 -
Amo13g1612 838 MobiDBLite consensus disorder prediction 1 148 - -
Amo13g1612 838 MobiDBLite consensus disorder prediction 438 471 - -
Amo13g1612 838 PANTHER RNA-BINDING PROTEIN RELATED 54 609 IPR045071 -
Amo13g1612 838 MobiDBLite consensus disorder prediction 733 748 - -
Amo13g1612 838 Pfam KH domain 261 309 IPR004088 GO:0003723
Amo13g1612 838 MobiDBLite consensus disorder prediction 438 472 - -
Amo13g1612 838 PANTHER RNA-BINDING PROTEIN RELATED 610 739 IPR045071 -
Amo13g1612 838 SMART kh_6 244 338 IPR004087 GO:0003676
Amo13g1612 838 MobiDBLite consensus disorder prediction 562 680 - -
Amo13g1612 838 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 485 563 IPR000504 GO:0003723
Amo13g1612 838 Gene3D K Homology domain, type 1 243 365 IPR036612 GO:0003723
Amo13g1612 838 Gene3D - 366 419 - -
Amo13g1612 838 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 610 739 - -
Amo13g1612 838 Pfam Splicing factor 1 helix-hairpin domain 135 242 IPR032570 -
Amo13g1612 838 MobiDBLite consensus disorder prediction 695 768 - -
Amo13g1612 838 CDD SF1_like-KH 247 363 - -
Amo13g1612 838 MobiDBLite consensus disorder prediction 291 311 - -
Amo13g1612 838 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 246 372 IPR036612 GO:0003723
Amo13g1612 838 ProSiteProfiles Zinc finger CCHC-type profile. 394 408 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1612 Amo-Chr13 21833267 21837534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1612 485 616 Eukaryotic Initiation Factors Gene Family AT3G16380 30.935 3.35e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1612 K13095 - gmx:100800982 1093.57