Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1593 ATGTCTAACAACAAATGCTACCATTTATTGTGCCATAAAATTCAATCTGCATTGATGGTCATGATTATTGTTCTTCTTGTTCTTGATCTTGCTCTATGTGATGTCACTTCAGGGGTAGCATCAGAATCTGAGGCCTTACTCAAATGGAAACAAAGCCTACCTCCACAACCAATTCTTGATTCATGGGTTATGAATCAAACTAGTCCATGTTCATGGAGAGGGATCACCTGTGATCTTCAAGGGAGTGTGACTACCATAAACTTAGCCTACACTGAACTTTCAGGTACTCTTCACAACCTAAACTTCTCTTCTTTCCCAAACCTTTTGATTCTTGATCTCAAAACAAATAACCTGACAGGAACTATACCACAAAACATTGGTGTCCTTTCAAAACTTCAATTCCTTGATCTTTCTACCAACTACCTCAATGGAACTTTACCTCTTTCTATTGCAAATTTGACTCAAGTTCATGAACTTGACTTGTCAAGAAATGACATAACAGGAATCTTAGACCCTCTTTTGTTTCCTGATTCAAGTGATGATCCAAAAAGAGGCTTAATTAGTATTAGGAAACTTCTATTCCAAGATACCCACTTAAGTGGAACACTTCCTAATGAAATTGGTAACATTAAAAACTTGACTGTTCTAGCTCTTGATGCTAACAATTTCTATGGACCTATTCCACCTTCTTTAGGAAATTGCACACATTTAAGTGTTCTTAGACTTAATGAGAATCAATTCTCAGGTACAATACCTCCTAGTATTGGCAAGTTAACTAACTTAACCGATGTGAGGTTTTTCGCAAATTACTTGAATGGCACGGTTCCTAGAGAACTCGGGAACTTGTCTTCTTTGGTTGTCCTGCATCTTGCTGAGAACAATTTCATTGGTGAGTTGCCACCTCAAGTGTGCAAAGCTGGAAAGCTTGTGAATTTCAGTGCTTCTTCTAACCGTTTCACCGGTCCAATTCCGGTTAGCCTTAGAAACTGTCCAAGCTTATACAGAGTTAGAATTGAATACAACATGCTTACAGGGTATGCTGATGAGGATTTTGGAGTGTATCCTAATCTAACATACATTGATTTCAGCTACAACAGGATTCAGGGTGAGATCTCTTCGAATTGGGCCGGCTGCGAAAACTTGCAGGTACTTAGAATGGCTGGGAATTCCATAAGTGGTAACATTCCGGCTGAGACTTTTCGGCTGAGCCAACTAGCAGAGCTTGATGTATCTTCCAACCAACTTTCTGGAGAGATTCCTCTAGAGATTGGTGATCCAACAACCTTGTATGAACTGAATTTCAGTGACAATAGACTTTCTGGTATGATACCGGCCGAAATTGGAAACCTTTTGAGTTTGCAGTCTTTGGACCTGTCAATAAACATGTTCCTGGGAGCAATCCCAAATACTATTGGTAACTTGAACAACTTGATGAAACTGAATTTGAGCAACAATAACTTGAATGGCACAATCCCATACCAAATCGGAAATCTTGCAAGCTTGCAAGATTTCTTGGACTTGAGTTTCAATTCACTTTTAGGGGAAATACCTGATGATCTTGGCAAGCTTGCGAATTTAATAATCTTGAATCTCTCTCATAACAATCTTTCAGGTTCTATTCCTGAGTCCATTAGCAAAATGTTGAGTTTGTCATTCATCAACCTTTCCAACAATCATTTGGAAGGTCCTGTGTTCAATGCGCGCATATTCAACTCTTCTAGCACTTCAGATTTGAGCAACAATGAAGACTTATGTGGGTATATCAAAGGTTTGCGACCTTGTGAGGTCTCGATCGATGTGCCTTCAAGCGCAAGTAACAAACACAAGCTTAAGGTTCTTGTCCCACTTCTTGCTTCTTTAGGAGGCGCTTTGTTTCTTTCATTGGTCTGTTTCACAATTTTCTTCCTCATCAACAAGCAAAATTTAGGATCAACAAGACGAAATTCGTGGAACAAGAGGTCTAATCCGTTCTCAATTTGGTGCTTCAATGGCAAAATTGTGTATGAAGACATAATGGAAGCTACCAAGAATTTCGACAGCGAATACTGCATAGGAGAAGGAGCATTAGGAAAAGTTTACAAAGCAACTCTGAAAGGAGGTCAAGTATTTGCTGTGAAAAAATTGAAATGTGATGAAGAAAACTTAGACATTGAAAGCATAAAGACATTCAAGAGTGAGGTAGCAGCCATGAATGAAATTCGCCACCGGAACATTGTAAAGCTCTATGGATTTTGCTCTAAAGGATTACACAGATTCTTGATTTATGAGTACATGGATAGAGGAAGCTTAGCAGACATGCTTGAGAATGATGAGAGAGCATTGGAGGTAGAGTGGGCTAAGAGAGTTGACATTGTTAAAGGCGTGGCCAGAGCTTTGTCTTACATGCATCATGATTGTAATCCTCCATTGATTCACAGAGACATTTCAAGCAAGAATGTTTTATTGTCATCTGATCTTACAGCTCATGTCTCGGATTTCGGCACAGCCAGATTTTTGAAGCCTGATTCGCTAATTTGGACCCCGTTTGCAGGCTCATATGGATATGCTGCTCCAGAACTTGCTTACACAATGGCAGTGACAGAGAAATGTGATGTGTTTAGTTTTGGGGTTTTGACTTTGGAGATTCTAAGTGGAAGGCACCCTGGTGATCTTGTTTCTTATATACAGACTACAACTAACCAAAGTATAAACTTCAAAGATATTTTGGACCCAAGACTCTTACCTCCTAATCATGATAAACATGTTCTTAAGGAATTAGCATTAATTGCTGATCTTAGTCTTTCTTGTTTACAAACAAATCCTCAATCCAGACCAACAATGAGAACTGTGGCTCAGTTGCTTGAAGTGGACACTGCTCATAATTCATGA 2868 0.3919 MSNNKCYHLLCHKIQSALMVMIIVLLVLDLALCDVTSGVASESEALLKWKQSLPPQPILDSWVMNQTSPCSWRGITCDLQGSVTTINLAYTELSGTLHNLNFSSFPNLLILDLKTNNLTGTIPQNIGVLSKLQFLDLSTNYLNGTLPLSIANLTQVHELDLSRNDITGILDPLLFPDSSDDPKRGLISIRKLLFQDTHLSGTLPNEIGNIKNLTVLALDANNFYGPIPPSLGNCTHLSVLRLNENQFSGTIPPSIGKLTNLTDVRFFANYLNGTVPRELGNLSSLVVLHLAENNFIGELPPQVCKAGKLVNFSASSNRFTGPIPVSLRNCPSLYRVRIEYNMLTGYADEDFGVYPNLTYIDFSYNRIQGEISSNWAGCENLQVLRMAGNSISGNIPAETFRLSQLAELDVSSNQLSGEIPLEIGDPTTLYELNFSDNRLSGMIPAEIGNLLSLQSLDLSINMFLGAIPNTIGNLNNLMKLNLSNNNLNGTIPYQIGNLASLQDFLDLSFNSLLGEIPDDLGKLANLIILNLSHNNLSGSIPESISKMLSLSFINLSNNHLEGPVFNARIFNSSSTSDLSNNEDLCGYIKGLRPCEVSIDVPSSASNKHKLKVLVPLLASLGGALFLSLVCFTIFFLINKQNLGSTRRNSWNKRSNPFSIWCFNGKIVYEDIMEATKNFDSEYCIGEGALGKVYKATLKGGQVFAVKKLKCDEENLDIESIKTFKSEVAAMNEIRHRNIVKLYGFCSKGLHRFLIYEYMDRGSLADMLENDERALEVEWAKRVDIVKGVARALSYMHHDCNPPLIHRDISSKNVLLSSDLTAHVSDFGTARFLKPDSLIWTPFAGSYGYAAPELAYTMAVTEKCDVFSFGVLTLEILSGRHPGDLVSYIQTTTNQSINFKDILDPRLLPPNHDKHVLKELALIADLSLSCLQTNPQSRPTMRTVAQLLEVDTAHNS* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1593 955 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 16 950 - -
Amo13g1593 955 SUPERFAMILY L domain-like 63 464 - -
Amo13g1593 955 Gene3D Ribonuclease Inhibitor 268 597 IPR032675 -
Amo13g1593 955 Gene3D Phosphorylase Kinase; domain 1 642 757 - -
Amo13g1593 955 SMART serkin_6 678 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1593 955 Pfam Leucine rich repeat 505 560 IPR001611 GO:0005515
Amo13g1593 955 ProSitePatterns Tyrosine protein kinases specific active-site signature. 803 815 IPR008266 GO:0004672|GO:0006468
Amo13g1593 955 ProSiteProfiles Leucine-rich repeat profile. 525 547 IPR001611 GO:0005515
Amo13g1593 955 Gene3D Ribonuclease Inhibitor 178 267 IPR032675 -
Amo13g1593 955 Pfam Protein kinase domain 683 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1593 955 PRINTS Leucine-rich repeat signature 477 490 - -
Amo13g1593 955 PRINTS Leucine-rich repeat signature 523 536 - -
Amo13g1593 955 SUPERFAMILY Protein kinase-like (PK-like) 652 948 IPR011009 -
Amo13g1593 955 Gene3D Transferase(Phosphotransferase) domain 1 758 954 - -
Amo13g1593 955 ProSiteProfiles Protein kinase domain profile. 678 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1593 955 SUPERFAMILY L domain-like 426 587 - -
Amo13g1593 955 Pfam Leucine rich repeat N-terminal domain 41 78 IPR013210 -
Amo13g1593 955 Gene3D Ribonuclease Inhibitor 38 177 IPR032675 -
Amo13g1593 955 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 16 950 - -
Amo13g1593 955 SMART LRR_typ_2 474 498 IPR003591 -
Amo13g1593 955 SMART LRR_typ_2 282 306 IPR003591 -
Amo13g1593 955 SMART LRR_typ_2 153 177 IPR003591 -
Amo13g1593 955 SMART LRR_typ_2 523 547 IPR003591 -
Amo13g1593 955 SMART LRR_typ_2 402 426 IPR003591 -
Amo13g1593 955 SMART LRR_typ_2 105 129 IPR003591 -
Amo13g1593 955 SMART LRR_typ_2 234 258 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1593 Amo-Chr13 21509915 21514601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1593 8 851 Receptor kinase-like Gene Family AT4G08850 38.789 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo13g1593 Pkinase 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1593 - - adu:107477534 1795.4