Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1581 ATGGAAGCTGCCGTGGTTGACGTCGGGACTAAGCTCCTCAAAGCTGGTTTCGCAATTCCTGATCAGTCTCCTGCCATGATAATTCCCACTCAGATGAAAAGAGTGCTTGATGATGGTGGGTCTGTGAGTGACGATAATTCAATAGCTGATAGTGTTACTGTTGATCCAGTGGTGCGAGGGTTTGTCAGAGATTGGGACGCCATTGAGGATTTATTGCATCATGTCTTGTATACTGGCCTTGGATGGGAAATTGGCAATGAAGGACAGATATTATTCACAGATCCACTTTGTACCCCCAAGGCCAACAAGGAACAGCTAGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCAGTTTTATCACTGTATGCTGTGGGACGTATCTCAGGGTGCACAGTTGATATTGGACATGGAAAAATAGATATTGCGCCAGTAATTGAGGGTGCTGTCCACCACATTGCATTGAGAAGATTCGAGTTTGGAGGTACTGATCTAACTAATTTCTTGGCACAAGAACTTGGGAAATCCAATCCACAAGTAAATATCAGCTTGTTTGATGTGGAGAGAATAAAAGAGCAATACTCATGTGCTGCTGAAGATGAATTAGCTTATCAAAAGACTGTTTCATGTCCTGTGGAGAAACATACACTTCCTGATGGACAGGTCATAACAATTGGGAGGGAAAGATATACTATTGGCGAAGCTTTYTTCCAACCAAGTCTGTTGGGTTTGGAGGCTCATGGCATTGTTGAGCAGCTTGTCCGTGCTGTTTCAACAGTGTCACCTGATAATCATCGGCAGCTGCTGGAAAATACGGTGGTTTGTGGGGGCACTTCTTCTATGACCGGTTTTGAAGATAGATTTCAGAAGGAATGTAGCTTAAGTTCGTCTGCCATTCAACCTGCTCTGGTTAAGCCTCCAGAGTACATGCCAGAGAACTTAAGCCAATATTCTGCATGGGTGGGAGGTGCGATACTTGCCAAAGTAGTTTTCCCTCAAAATCAACATATAACCAAGGGAGATTATGATGAAACTGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1089 0.4343 MEAAVVDVGTKLLKAGFAIPDQSPAMIIPTQMKRVLDDGGSVSDDNSIADSVTVDPVVRGFVRDWDAIEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIALRRFEFGGTDLTNFLAQELGKSNPQVNISLFDVERIKEQYSCAAEDELAYQKTVSCPVEKHTLPDGQVITIGRERYTIGEAFFQPSLLGLEAHGIVEQLVRAVSTVSPDNHRQLLENTVVCGGTSSMTGFEDRFQKECSLSSSAIQPALVKPPEYMPENLSQYSAWVGGAILAKVVFPQNQHITKGDYDETGPSIVHRKCF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1581 362 Gene3D Actin; Chain A, domain 4 167 253 - -
Amo13g1581 362 SUPERFAMILY Actin-like ATPase domain 133 362 IPR043129 -
Amo13g1581 362 Pfam Actin 2 362 IPR004000 -
Amo13g1581 362 SMART actin_3 1 362 IPR004000 -
Amo13g1581 362 PANTHER ACTIN 1 361 IPR004000 -
Amo13g1581 362 Gene3D - 5 356 - -
Amo13g1581 362 SUPERFAMILY Actin-like ATPase domain 2 140 IPR043129 -
Amo13g1581 362 PRINTS Actin signature 47 69 IPR004000 -
Amo13g1581 362 PRINTS Actin signature 102 115 IPR004000 -
Amo13g1581 362 PRINTS Actin signature 127 146 IPR004000 -
Amo13g1581 362 PRINTS Actin signature 218 234 IPR004000 -
Amo13g1581 362 CDD NBD_sugar-kinase_HSP70_actin 35 168 - -
Amo13g1581 362 PANTHER BNACNNG31150D PROTEIN 1 361 - -
Amo13g1581 362 Gene3D - 125 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1581 Amo-Chr13 21355445 21358940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1581 5 362 Cytoskeleton Gene Families AT3G18780 38.133 1.56e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1581 K16615 - gmx:100813266 661.373