Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1565 AGGTCTTTGAACCGAAGCGAGAGTGAGCTGAGTAGACTAGTTTCCCCTCTGGTCTCCGAGAACCACTGTCACTGTTACTGCGACTACAGTGGCTACTTCTGCCCATGGAAGCTGCCGTGGTTGACGTCGGGACTAAGCTCCTCAAAGCTGGTTTCGCAATTCCTGATCAGTCTCCTGCCATGTGTGATTATTTATCCTCAGAATTCCCTAATTCGTTTGATTGTGGCTCTTTTTGATATGGCTCAGATAATTCCCACTCAGATGAAAAGAGTGCTTGATGATGGTGGGTCTGTGAGTGACGATAATTCAGTAGCTGATAGTGTTACTGTTGATCCAGTGGTGCGAGGGTTTATCAGAGATTGGGACGCCGTTGAGGATTTATTGCATCATGTCTTGTATACTGGCCTTGGATGGGAAATTGGCAATGAAGGACAGATATTATTCACAGATCCACTTTGTACCCCCAAGGCCAACAAGGAACAGCTAGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCAGTTTTATCACTGTATGCTGTGGGACGTATCTCAGGGTGCACAGTTGATATTGGACATGGAAAAATAGATATTGCGCCAGTAATCGAGGGTGCTGTCCACCACATTGCATCGAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCTTGGCACAAGAACTTGGGAAATCCAATCCACAAGTAAATATCAGCTTGTCTGATGTGGAGAGAATAAAAGAGCAATACTCATGTGCTGCTGAAGATGAATTAGCTTATCAAAAGACTGTTTCATGTCCTGTGGAGAAACATACACTTCCTGATGGACAGGTCATAACAATTGGGAGGGAAAGATATACTATTGGCGAAGCTTTGTTCCAACCAAGTCTGTTGGGTTTGGAGGCTCATGGCATTGTTGAGCAGCTTGTCCGTGCTGTTTCAACAGTGTCACCTGATAATCATCGGCAGCTGCTGGAAAATACTGTGGTTTGTGGGGGCACTGCTTCTATGACCGGTTTTGAAGATAGATTTCAGAAGGAATGTAGCTTAAGTTCGTCTGCCATTCAACCTGCTCTGGTTAAGCCTCCAGAGTACATGCCAGAGAACTTAACCCAATATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTCCCTCAAAATCAACATATAACCAAGGGAGATTATGATGAAACTGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1257 0.4415 RSLNRSESELSRLVSPLVSENHCHCYCDYSGYFCPWKLPWLTSGLSSSKLVSQFLISLLPCVIIYPQNSLIRLIVALFDMAQIIPTQMKRVLDDGGSVSDDNSVADSVTVDPVVRGFIRDWDAVEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGTDLTNFLAQELGKSNPQVNISLSDVERIKEQYSCAAEDELAYQKTVSCPVEKHTLPDGQVITIGRERYTIGEALFQPSLLGLEAHGIVEQLVRAVSTVSPDNHRQLLENTVVCGGTASMTGFEDRFQKECSLSSSAIQPALVKPPEYMPENLTQYSAWVGGAILAKVVFPQNQHITKGDYDETGPSIVHRKCF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1565 418 Gene3D - 102 412 - -
Amo13g1565 418 CDD NBD_sugar-kinase_HSP70_actin 91 224 - -
Amo13g1565 418 Gene3D - 181 381 - -
Amo13g1565 418 PANTHER ACTIN 81 417 IPR004000 -
Amo13g1565 418 Pfam Actin 110 418 IPR004000 -
Amo13g1565 418 PANTHER BNACNNG31150D PROTEIN 81 417 - -
Amo13g1565 418 Gene3D Actin; Chain A, domain 4 223 309 - -
Amo13g1565 418 SUPERFAMILY Actin-like ATPase domain 189 418 IPR043129 -
Amo13g1565 418 SUPERFAMILY Actin-like ATPase domain 107 196 IPR043129 -
Amo13g1565 418 PRINTS Actin signature 183 202 IPR004000 -
Amo13g1565 418 PRINTS Actin signature 274 290 IPR004000 -
Amo13g1565 418 PRINTS Actin signature 103 125 IPR004000 -
Amo13g1565 418 PRINTS Actin signature 158 171 IPR004000 -
Amo13g1565 418 SMART actin_3 59 418 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1565 Amo-Chr13 21193362 21196511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1565 112 418 Cytoskeleton Gene Families AT1G49240 40.256 8.75e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1565 K16615 - gmx:100813266 612.453