Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1547 ATGAAGCGATTGAGGTCAAGCGAAGATCTCCACTCGTACGGTGACAAGAATGGCTGCAAGGATTCGAATCTGAACCGGTCATTTTCGTCGTCGCAGCGAAGCTTCTACTATAAGCCTGACAGTGCACCGCGGAAAGGCTCGCTATCTTCGTCATCGTCTTCTCGCCATGACAGAGATCGAGCGTTGGATGAGGATCGGGAGGGTTCAAGGTTGGTTCGGAAGCGATCGGAACATGATTTCGACGGTTTCGATCGGAGGAAGGGGTTTGATCGGTACAGAGACGGTGGCGGTTACGGCGGCGGTGGAGGAGGAGATAGAAGTTTGATTCACCGGTCAGAGAGCTTCTGCGGAGGTTCGAGGAGGGAGTTTCCGAAGGGGTTCCGGTCGGAGAGGGACCGGCCGAGGAGGGAAGGCAGCGTGTCTTCGTGGCGGAGAGGGTTGAAGGATTTTGATGAGAACGGTGGCGGAAGCAGAGGGAGTAGTAGAGTTTCTTCGACGGCAGAGGAGAGGGTGGTAAGGTCGCCGAAGGGTTTGAGGGATGTGAAGTCGCCGACATGGTCGAAAGACTCCGAAAGTGAGCAATCGAAGAAGAGGTCTTCGTCTCCGAGAGTATCGCTGAGAGATGACAAGTCCAAGTCCAAGTCTAAGTCACCAACTTGGTCCAAGGACTCAGAAAGTGAGCAATCAAAAAGTTGTGAGCGGTCCAAGAGTGTTGAGCAGTTTAAGAGCGTTGAGCAGTCTAAGAATGTTGAGCAACCCAAGAGCGTTGAGCAGTCGAAGAGCATTGAGGTGAAGAAAACCGAGGAGTTGCAGGTTCAGAGTGGAAGCAGCAGTGAAATGGAAGAAGGGGAGTTAGAACCTGAGCCTGCTCCTGCTCCTGTTCCTCAGGCTGAACCAGAGGCGGCTCTCAAAGTTGCTTCTGAAAGTGAAGAACGCAAGGATTCTGCCCTTTTGGAGAATGCTGAGAAGGAAGTCATGAACGAATGTGAGGTCAATGCTACAAAGGCTGCAAAGGGCGATACACAATTATACGAGGAAAAACCTAATATGGACATTGATTCTGAGGTGAAAAATGCAGAAAAGGAAGCCGATAAGGTGCAAGATGTTCAAGACAATCCTGCGAAGGATGTTCCTGTTGCTAATACTGAAGTCAAACTGGCTCGTGATGTTGTTAATAGAAAAGAGGAGTGTTTGAAGGCTGACGATTCTGAGTGCAAGGAGGAAACAAAGAAGGATGCATATTTGGCGATGTCTGTGGTTAACGAAGAGGAGCAGAAACAGGACAAGGGTGTGGATTTAAAAGCTAGCGCAGGTCTTGACAAACCAGAGTTAAATGATGAAGTCTCAAAAGAGAATGAAGCTCCAAAAGAAGTGAATAGGGAATTCATGGCGGAGGGTGTGGCCAACAACATCAAGGATAAAGGGAAAAGCGTCTCTGTTACCCCAACTAATGTTGCCCATTCTTCAGAAGATGGCTTGTGGACTGATAGAGGATCAAGAGATCTTGCCACATGCTCTGCTGATGTTATGGACGGCCCTAGCACCAGAGGATTCGAGTTGTTTTCTAGATCTCCTGTCAGAAAACCGGAGAAAAAGGAGCAGTCAGGTCTCAGCAAGAAGGATGATGGTCTTGGAATGGAGCAGCTTGATCTTTCTCTTAGCTTACCAAATGTTCTGTTACCTATTGGTTCTCATGAGATGGCAACGCAAGCCCCTGGATCCCCCAGTCAAGCTCGGAGTGTGCAGTCATTAAGTACTACATTTTGTACCAACTCAGATGGTTTTACTGCATCAATGTCTTTTTCAGGCTCCCAATCTCTCTACCACAATCCAAGCTGTTCTCTAACAAAAAATGTAGTTGACTATGAACAATCTGTTGGCAGCCGCCCCTTATTTCAGGGAATTGATTGGCAAAGCCTATCTCAGAATGATCCCAAACATAAAGAAGTTCCTTATAGCAAGATAACTTCTGCAAATGGAAATGGTTCATTTTACCAATCTCAAGCATCATGGGGTGTTTTAGATGGTCAAGTTGTGAAGGGTCAACAATCTAGGGTCCTAGAAGGAAGCTCAAAAATGGGCAGCGGACTTGACAGGCAATTGAGTTTTCAGAAGCAGTTTTCGGGACAGTCAAGACGCCATGATGATGTTAGATCTCCTACACACAGTGCTGGGTCTCATGACATTGGGTCAAATTATAGTCGTGAGAAAAAGGGGGAAGCCAAGGATAGGAGTAGTGGTAGTTTGTATCGAACTACTAGCCAAAAGGAGCAAGAACAAATTCTGATGGGTGGAATTGACTTTGTTGAGACTATCATTGCAAAACTGGTTTCTGAACCAGTGAATGCGACGACTCGAAAGTTTCATGAAATGGGAGGACAGCCTGTAGCGTTTCTGAAGGAGGGCATTAGGGAAATCATGCTTAATCCAGATAAGCACGGGCAAATACTTGCTTTTCAAAAAGTTCTGCAGAATAGGTCTGACATAACCGTGGATGTCTTACTAAAGTGTCATCGAGTACAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTAACCCATTATCTTCACATAGACAACAGCATTCCATCTTCTGATTTAGCTCAAGTTTTTCTGAACCTAAGATGTAGGAATCTTTCATGTCGAAGCCAATTGCCTGTGGATGAATGCGATTGCAAGGTTTGTACACAGAAGAGTGGTTTTTGCAGGGAATGCATGTGTCTGGTGTGTTCTAAGTTTGACAACGCATCAAATACATGTAGTTGGGTTGGGTGTGATGTTTGCCTTCACTGGTGTCATACTGACTGTGGGTTACGGGAGTCTTATATTAGAAATGGTCACAGTACTACTGGGACAAGAGGAATGACAGAGATGCAGTTTCATTGTATTGCTTGTGATCACCCGTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCAAAAGATTGGCCAGTTGAAACCCTCTGCAAGGAGCTTGAATATGTGAAGAGAATTTTTAATGCCAGCAAGGACATGAGAGGGAGACAACTGCATGAGATTGCAGATCAAATGCTACCAAGGCTGGTAAACAAGTCGAACCTTCCTGAGGTTTTGAGGCACGTAATGTCTTTCCTTGTTGATGGGGATTCTTCCAAATTAGCCATGGCTACAAACTTATCTGGGAAGGAACGAAGTAAGGAAATCAAAGGGGTAGCTGGGCCAAGCCAGGAAGCTTCTTGGCTGAAATCTACTTATTCGGAGAAGAAACCTGTGTTAGAAAGGCCAGCAAACATCCTTACCAGCTTTGATCAAAATGATAAAAGGACACTGGCGCCTGAGCTGCAAATGAGCATTGTCCCAAAAGACTTCTGTTTTGATGAATTGGAGAGTGTAGTTAAAATCAAACAAGCAGAGGCTAAAATGTTTCAGTCACGTGCTGATGATGCAAGAAGAGAAGCTGAAGGGTTGAAACGTATTGCCCTTGCAAAGAGTGAGAAAATTGATGAAGAGTATACTCAGCAAATTGCGAAGCTGCGACTGGGTGAGACAGAGGAAATGCGTAGGCAGAAACTCGAAGAACTTCAAGCATTAGAACGGGCACATCTGGAGTATTTCAACATGAAAAGGAGAATGGAGGCAGACATTAAAGATCTTTTATCTAAAATGGAAGCTACTAAAAGGAGTCTTGCCCTGTGA 3684 0.4547 MKRLRSSEDLHSYGDKNGCKDSNLNRSFSSSQRSFYYKPDSAPRKGSLSSSSSSRHDRDRALDEDREGSRLVRKRSEHDFDGFDRRKGFDRYRDGGGYGGGGGGDRSLIHRSESFCGGSRREFPKGFRSERDRPRREGSVSSWRRGLKDFDENGGGSRGSSRVSSTAEERVVRSPKGLRDVKSPTWSKDSESEQSKKRSSSPRVSLRDDKSKSKSKSPTWSKDSESEQSKSCERSKSVEQFKSVEQSKNVEQPKSVEQSKSIEVKKTEELQVQSGSSSEMEEGELEPEPAPAPVPQAEPEAALKVASESEERKDSALLENAEKEVMNECEVNATKAAKGDTQLYEEKPNMDIDSEVKNAEKEADKVQDVQDNPAKDVPVANTEVKLARDVVNRKEECLKADDSECKEETKKDAYLAMSVVNEEEQKQDKGVDLKASAGLDKPELNDEVSKENEAPKEVNREFMAEGVANNIKDKGKSVSVTPTNVAHSSEDGLWTDRGSRDLATCSADVMDGPSTRGFELFSRSPVRKPEKKEQSGLSKKDDGLGMEQLDLSLSLPNVLLPIGSHEMATQAPGSPSQARSVQSLSTTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNVVDYEQSVGSRPLFQGIDWQSLSQNDPKHKEVPYSKITSANGNGSFYQSQASWGVLDGQVVKGQQSRVLEGSSKMGSGLDRQLSFQKQFSGQSRRHDDVRSPTHSAGSHDIGSNYSREKKGEAKDRSSGSLYRTTSQKEQEQILMGGIDFVETIIAKLVSEPVNATTRKFHEMGGQPVAFLKEGIREIMLNPDKHGQILAFQKVLQNRSDITVDVLLKCHRVQLEILVALKTGLTHYLHIDNSIPSSDLAQVFLNLRCRNLSCRSQLPVDECDCKVCTQKSGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTRGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWPVETLCKELEYVKRIFNASKDMRGRQLHEIADQMLPRLVNKSNLPEVLRHVMSFLVDGDSSKLAMATNLSGKERSKEIKGVAGPSQEASWLKSTYSEKKPVLERPANILTSFDQNDKRTLAPELQMSIVPKDFCFDELESVVKIKQAEAKMFQSRADDARREAEGLKRIALAKSEKIDEEYTQQIAKLRLGETEEMRRQKLEELQALERAHLEYFNMKRRMEADIKDLLSKMEATKRSLAL* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1547 1227 Pfam PHD - plant homeodomain finger protein 876 999 IPR032881 -
Amo13g1547 1227 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 787 809 IPR004082 -
Amo13g1547 1227 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1161 1183 IPR004082 -
Amo13g1547 1227 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 826 841 IPR004082 -
Amo13g1547 1227 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 867 888 IPR004082 -
Amo13g1547 1227 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1122 1142 IPR004082 -
Amo13g1547 1227 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 841 856 IPR004082 -
Amo13g1547 1227 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 986 1005 IPR004082 -
Amo13g1547 1227 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 913 933 IPR004082 -
Amo13g1547 1227 CDD PHD_OBE1_like 906 965 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 359 378 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 473 544 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 172 241 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 704 754 - -
Amo13g1547 1227 PANTHER PROTEIN OBERON 4 1 1226 - -
Amo13g1547 1227 Coils Coil 1176 1196 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 242 257 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 731 745 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 51 93 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 18 37 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 115 152 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 304 324 - -
Amo13g1547 1227 Coils Coil 1204 1224 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 474 490 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 1 16 - -
Amo13g1547 1227 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1226 IPR004082 -
Amo13g1547 1227 Coils Coil 349 369 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 1 324 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 421 457 - -
Amo13g1547 1227 Coils Coil 1128 1155 - -
Amo13g1547 1227 Pfam Coiled-coil region of Oberon 1099 1215 IPR032535 -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 523 544 - -
Amo13g1547 1227 MobiDBLite consensus disorder prediction 422 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1547 Amo-Chr13 20982647 20987656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1547 876 1024 PHD Gene Family AT5G57380 27.517 4.59e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1547 - - gmx:100817003 1548.87