Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1508 GAAGAAAAAAAGGAGATGGGTAGGGGTAAGATTGAAATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCCAAAAGGAGAACCGGTCTTCTTAAGAAAGCTCAGGAACTCGCTATTCTCTGCGATGCTGAGGTGGCTGTCATCATCTTCTCTAATACAGGGAAGCTTTTTGAGTTTTCCAGTTCTGGAATGAAAAGAACACTTTCAAGATACAACAAATGCACCGATTCTTCAGAGGTGGCTATAGTTGAATGTAAAGCAGAGAAGGAAGATTCTAAGATGGTGGAGGCTCTTAAAGATGAAATTGCAAAGCTAGAAAGAAAGCAACTATGGCTACTGGGTAAGGACATGACAGGATTGAGTATAAAAGAACTGCAACATTTAGAGCAGCAACTTAACCAAGGGTTGTTGGCGGTCAAGGAGAGGAAGGAGGAATTACTTATGGATCAACTGGAGCAGTCTAGGGTTCAGGAACAGAGAGCTATGTTGGAGAATGAAACTTTGAGAAGACAGGCAAGTATTGAGGAGCTTCGTTGTCTTTTCCCAGTAACAGAACGTGTAGTCCCGTCTTATCTTCACTACCCCCATGTGGAAAGAAAGAATGTTTATGTAGATAATGGTGTTGTTAAGTGTACCAGCTTGGCAAGTAACTGTGAAAACGAGAGAGGAGATTCGGACACTGCATTGCATTTAGGGTTGCCAACTGATGTTAGTCACAAGAGGAAGGCAGCTGAGAGAGAAACATTTTCGAATGAGTCAGAAAGCCAAGTTGCTCTACTCTGA 792 0.4205 EEKKEMGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSEVAIVECKAEKEDSKMVEALKDEIAKLERKQLWLLGKDMTGLSIKELQHLEQQLNQGLLAVKERKEELLMDQLEQSRVQEQRAMLENETLRRQASIEELRCLFPVTERVVPSYLHYPHVERKNVYVDNGVVKCTSLASNCENERGDSDTALHLGLPTDVSHKRKAAERETFSNESESQVALL* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1508 263 PANTHER MADS BOX PROTEIN 6 241 - -
Amo13g1508 263 CDD MADS_MEF2_like 7 82 IPR033896 GO:0000977|GO:0045944
Amo13g1508 263 Gene3D - 18 87 IPR036879 GO:0003677|GO:0046983
Amo13g1508 263 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Amo13g1508 263 Coils Coil 154 174 - -
Amo13g1508 263 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g1508 263 ProSitePatterns MADS-box domain signature. 8 62 IPR002100 GO:0003677|GO:0046983
Amo13g1508 263 ProSiteProfiles K-box domain profile. 91 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g1508 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Amo13g1508 263 Coils Coil 91 111 - -
Amo13g1508 263 Coils Coil 128 148 - -
Amo13g1508 263 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Amo13g1508 263 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 6 241 - -
Amo13g1508 263 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Amo13g1508 263 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Amo13g1508 263 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Amo13g1508 263 SUPERFAMILY SRF-like 7 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1508 Amo-Chr13 20363122 20365743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1508 6 256 MADS-box Gene Family AT5G13790 55.118 8.37e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo13g1508 K-box 3.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1508 - - zju:107417456 363.614