Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1496 AACCGCCGAACCCCCCAGCCAACCTCGGCTCTCCGTCGGCTCTCCGTCGTTCGAGCTATACAATCGGCAGTCCCTCACGACCTCACCCCCGTCACTTTGTCGTCACCCGGTCTCGGCCTCACCTCGTCAGCGGCGGAAAGTGTTCATCAAAACGGCCTCACTTCTCCGTCACTCTCAGTCTCTGCTCCCTCGGATAATTTGGGTGGAAGTGGTGGTCGTCAGAAAGCTCAGAATGCTTTCATCTTCTGCCTCAGTGCCTCTGCTCCCTCAGTGCACACATACAATGGATTGCATGAGAATCCAAAGCTCCTTACTCGCTTCAACTTCATCGATCATCTTTATCTTGCTCTCCACAGACACGGCATAGTTGCCTTCAGGGATGATACTAGGCTCCAGAAAGGAGGACCTATATCAGCAGGGCTTCTGGAAGCTATTGAAAGATCACAGGTTCTGATTGTGGTCTTCTCTATCAACTATGCTTCCTCCACATGGTGCTTGCAAGAGCTGGCAAAGATAGCTGACTGCATTGAAACACGGGGACAGCGTGTTCTGCCAATTTTCTATGATGTGAGTCCAACTGAGGTCAGAAGGCAACGTGGAAATTATGAAGCAGCCTTTATGAAACATGAAGAAAGATTCAAAGATGATGCAGAGATGATGGAGCAAGTGCGAAGATGGAGGGTGGCTCTAATAGAAGTAGCTAATCTCTCTGGCTGGGATCTGAAGAACGATAAGTCACAACTGGCTGTGATTGAAAATATTGTCAAATTGGTACCAAGCATAGTGAGTCCCAAACCATCATCAAGTCTATCGGATGATATAGTTGGGATGCATTCTCCTCTACAAGAATTAGAAAAGCTTCTACTTTTGGACTCAGAGGATGATGTTCGAGTTGTAGGAATTTGTGGAATGGGTGGCATAGGAAAGTCAACTCTTGCCAAGATTTTATATGAAAAGATCTCTCATCAATATGATGCTTCATGTTTTGTGGAAGATGTAAGTAGAATTTACGGAGGTTATGGTCCACTTGGTGTACAAAAGCAACTTTGTCAAGCTTTCATGGAAGAAAATTTTTCGACATGCAATCTTTCAGTGGCAAGTAATGTGATTCAAACTAGGTTACGCCATAGAAAGGTTCTGATAGTTCTTGATAATGTTGATGAGGGGATTCAATTGGAGAAGTTGGCTATAAAACGGGAAAGGCTAGGTAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAGCATATATTGAGAGAGTATGGAGCGGACGACGTTTACAAAGTTCCACTCTTAAATGATGAGAATGCTCTCCAATTGTTTTGCAGAAAAGCTTTCAAATGTAATCAAGTTGCAAAAGATTATGAAAGCTTGACAAATTCTGCATTAAAATATGCTGATGGACATCCGTTAGCAATCAGAGTATTGGGCTCATTTTTGTTTGGGCGAAATGTGTCAGAGTGGAGTAGCGCATTGATTAGATTGAAAGAAAAGCCAACAGAAGAGATTCTGGATGTGCTACGAATCAGTTTTGATGCACTTGAGGATATGGAAAAGGAAATATTTCTTGATATTGCTTGTTTCTTTTCAAATGACAGTGAAGAATACGTGAAAGATATTTTACGTATTAGAGGATTTCATCCTGATATTGGTATAAGAATTCTCATTGATAAATCACTCATAACTGTTGATGGATGGAAAATAGTTATGCACGATCTGTTGAGAGAGTTGGGTAGAAGTATTGTTCGAGAAAAATCACCCCACGAACCAAGAAAGTGGAGCAGGTTATGGAATCAAAAGGATCTAAGCAATGTCTTACTAGAAAACAAGAGTTCCTTTGTGTGTGTCTCGACAATGGAGGACTCAACCAAGGTGCGGTTGGGGATGTGCCCCCACTGTTTCACTATCCTTCGTATGCATGCCGATTATTCTCTCTTTGAATGTGGTGAATGCCATATTGTTCTTGGAGCAAAGCATAAAGGTCTTGTTACCTCGTTGGAGATTGAAGATAGTGCCAGATCAGGAGGTTCCTCATCATGGGGGAGAAAATCAAAGAAAATAAAGAGGAAGGTGCAGAAACAGGAACAGAGGTCTCAAATGGGATATCAAGAAGAGCACAAATTCTSTRAGAGAWTGTCTGATTTGGAAAAGCAAGAGAAAGATGAGATGGAGYTTTTAAGAAAGCTCTTGGATGATATAATAGAYATGAGATTAYCCAATTACGATTATTCTRATGAGGGRAAGTCTAAAAGCAGTTCTAGTTTTGTTAGAACCCATTCAGATCCATCCTTTCTCAAATATTCACAAGGATCACGTGAAACAACCTCAATATCCTACTCTGACTTTTCAAGTTTTAAGGACACCGTCACTCTTGACTCTTCAAGTGAGATTGAGGAAACTGAGTCCAAAGGAAGCAGATTGCCGCTTGCTCCATTATTATCTTCAGATACAACAGAAGCTTTCTCTGGCATGCATAATCAAGTTGAAGCTGATATTATTCCCAAAACTAAACAGAAAAAGGACACACAATCTTCATTTGGTAAAGCTGATATTCCAATCACCCCACAAGCTGATGATGACCTTCCTGTCAAGGTAGAAAATTTGGTGACAGAAGATTTAGATGAACTGCGATCATCTTTTGAAACTTTAAAGGTTTCAACTGTACCACAATTGAAGTCCTTATCATCCAACCTTCACAGCCTGAAAATTGAAGGGTGTGAATCCTTAGAGGCTCTTCCAGATGACTTACTAGCAGGAACAACTGCCCTTAAAGAGTTGTACCTGATAAGTTGTTGTTCACTTAAATCCTTCCCCTACCCTGCTGCTTCCTTGACAACACTTTACATGAGAAACTGCAGGAGAATGAGATTTCTCCCCTCTTCAGAATCAAGAAAGAAGCTTGCCTCTCTCGAACATTTGTTCATAGGGAGCAGCTGTGATTCCCTCACTACCTTGACCTTAGACTCTTTCTGCAAACTCAAAATTCTCTGTATATGGGATTGTCACAATCTTCAATCAGTTAATGTTACCAGAGAGTTTAAGGGTGATCTTGCATCACTTGAGTCTCTAGAGATTAGAGATTGCCCAAGATTGAGGTTTTTACCAGATGGAGCATTGCATACTCCAAATTTAGAATCCATATTGATTTCCAATTGCAAGAATCTTAATGCATTGCCCAGTGGTATGAACTTTCTTACATCCCTCAAGACATTGTTTTTAAACAGATGTCCAGCGATTGAATCTCTCCCACTTGGGGGTCTGCCTTCAAGTTTGATTGTACTCTCCATAGCTTATTGTGATAAACTCATACCTCAAGAGGATTGGGGTCTGTGTAGTCTTGAATCTCTCCGTCGATTTGAGCTTGAAGGTGGATGCATGGGCATGGAGTCATTTCCGAATGAGAAGCTTCCATGCAATATCAACTCTCTGCGCATAAGCACACTAAATAGTCTCAAGAAGCTGAACCACAAGGGATTGCAACACCTGAATGTTCTTCACACACTTGAAATTCATGGTTGCGATATTCTTCGATCCTTGCCGGATCAAGGGCTTCCTTCCTCCCTAATTAATCTGTGTGTCCAAGAATGCCCGTTGTTAACTCCAAGGCTTATACCAAAAAGAGGGAAGGAATGGCACAAAGTGGCTCATATCCCAAACATCCAAATTGATCACCAAATAGTCTCTGCATACTAG 3693 0.4151 NRRTPQPTSALRRLSVVRAIQSAVPHDLTPVTLSSPGLGLTSSAAESVHQNGLTSPSLSVSAPSDNLGGSGGRQKAQNAFIFCLSASAPSVHTYNGLHENPKLLTRFNFIDHLYLALHRHGIVAFRDDTRLQKGGPISAGLLEAIERSQVLIVVFSINYASSTWCLQELAKIADCIETRGQRVLPIFYDVSPTEVRRQRGNYEAAFMKHEERFKDDAEMMEQVRRWRVALIEVANLSGWDLKNDKSQLAVIENIVKLVPSIVSPKPSSSLSDDIVGMHSPLQELEKLLLLDSEDDVRVVGICGMGGIGKSTLAKILYEKISHQYDASCFVEDVSRIYGGYGPLGVQKQLCQAFMEENFSTCNLSVASNVIQTRLRHRKVLIVLDNVDEGIQLEKLAIKRERLGRGSRIIIVSRDEHILREYGADDVYKVPLLNDENALQLFCRKAFKCNQVAKDYESLTNSALKYADGHPLAIRVLGSFLFGRNVSEWSSALIRLKEKPTEEILDVLRISFDALEDMEKEIFLDIACFFSNDSEEYVKDILRIRGFHPDIGIRILIDKSLITVDGWKIVMHDLLRELGRSIVREKSPHEPRKWSRLWNQKDLSNVLLENKSSFVCVSTMEDSTKVRLGMCPHCFTILRMHADYSLFECGECHIVLGAKHKGLVTSLEIEDSARSGGSSSWGRKSKKIKRKVQKQEQRSQMGYQEEHKFXXRXSDLEKQEKDEMEXLRKLLDDIIDMRLXNYDYSXEGKSKSSSSFVRTHSDPSFLKYSQGSRETTSISYSDFSSFKDTVTLDSSSEIEETESKGSRLPLAPLLSSDTTEAFSGMHNQVEADIIPKTKQKKDTQSSFGKADIPITPQADDDLPVKVENLVTEDLDELRSSFETLKVSTVPQLKSLSSNLHSLKIEGCESLEALPDDLLAGTTALKELYLISCCSLKSFPYPAASLTTLYMRNCRRMRFLPSSESRKKLASLEHLFIGSSCDSLTTLTLDSFCKLKILCIWDCHNLQSVNVTREFKGDLASLESLEIRDCPRLRFLPDGALHTPNLESILISNCKNLNALPSGMNFLTSLKTLFLNRCPAIESLPLGGLPSSLIVLSIAYCDKLIPQEDWGLCSLESLRRFELEGGCMGMESFPNEKLPCNINSLRISTLNSLKKLNHKGLQHLNVLHTLEIHGCDILRSLPDQGLPSSLINLCVQECPLLTPRLIPKRGKEWHKVAHIPNIQIDHQIVSAY* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1496 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 525 IPR027417 -
Amo13g1496 1230 MobiDBLite consensus disorder prediction 51 71 - -
Amo13g1496 1230 Coils Coil 711 711 - -
Amo13g1496 1230 SUPERFAMILY "Winged helix" DNA-binding domain 502 606 IPR036390 -
Amo13g1496 1230 Coils Coil 713 724 - -
Amo13g1496 1230 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 965 1077 IPR044974 GO:0006952
Amo13g1496 1230 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 105 619 IPR044974 GO:0006952
Amo13g1496 1230 Gene3D - 431 515 IPR042197 -
Amo13g1496 1230 Gene3D Ribonuclease Inhibitor 941 1085 IPR032675 -
Amo13g1496 1230 Gene3D Ribonuclease Inhibitor 1086 1207 IPR032675 -
Amo13g1496 1230 SUPERFAMILY L domain-like 886 1211 - -
Amo13g1496 1230 MobiDBLite consensus disorder prediction 674 716 - -
Amo13g1496 1230 Gene3D - 265 427 IPR027417 -
Amo13g1496 1230 Pfam TIR domain 104 260 IPR000157 GO:0007165
Amo13g1496 1230 Gene3D - 101 264 IPR035897 -
Amo13g1496 1230 SMART till_3 105 236 IPR000157 GO:0007165
Amo13g1496 1230 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 965 1077 - -
Amo13g1496 1230 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 105 619 - -
Amo13g1496 1230 SUPERFAMILY Toll/Interleukin receptor TIR domain 107 239 IPR035897 -
Amo13g1496 1230 Coils Coil 726 736 - -
Amo13g1496 1230 MobiDBLite consensus disorder prediction 826 852 - -
Amo13g1496 1230 Pfam NB-ARC domain 290 501 IPR002182 GO:0043531
Amo13g1496 1230 PRINTS Disease resistance protein signature 373 387 - -
Amo13g1496 1230 PRINTS Disease resistance protein signature 1015 1031 - -
Amo13g1496 1230 PRINTS Disease resistance protein signature 466 480 - -
Amo13g1496 1230 PRINTS Disease resistance protein signature 298 313 - -
Amo13g1496 1230 ProSiteProfiles TIR domain profile. 89 262 IPR000157 GO:0007165
Amo13g1496 1230 MobiDBLite consensus disorder prediction 693 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1496 Amo-Chr13 20158986 20164748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1496 275 610 WRKY Transcription Factor Family AT5G45050 36.202 4.01e-57 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1496 - - aip:107629657 2140.54