Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1486 ATGGGTAGGGGTAAGATTGAAATCAAAAGGATTGAGAATGCTAACAGCAGACAAGTTACATTCTCCAAAAGGAGAACCGGTCTTCTTAAGAAAGCTCAGGAACTCGCTATTCTCTGCGATGCTGAGGTGGCTGTCATCATCTTCTCTAATACAGGGAAGCTTTTTGAGTTTTCCAGTTCTGGAATGAAAAGAACACTTTCAAGATACAACAAATGCACCGATTCTTCAGAGGTGGCTATAGTTGAATGTAAAGCAGAGAAGGAAGATTCTAAGATGGTGGAGGCTCTTAAAGATGAAATTGCAAAGCTAGAAAGAAAGCAACTACGGCTACTGGGTAAGGACCTGACAGGATTGTGTATAAAAGAACTGCAACATTTAGAGCAGCAACTTAACCAAGGGTTGTTGGCGGTTAAGGAGAGGAAGGAGGAATTACTTATGGATCAACTGGAGCAGTCTAGGGTTCAGGAACAGAGAGCTATGTTGGAGAATGAAACTTTGAGAAGACAGATTGAGGAGCTTCGTTGTCTTTTCCCAGTAACAGAACGTGTAGTCCCGTCTTATCTTCACTACCCCCATGTGGAAAGAAAGAATGTTTATGTAGATAATGGTGTTGTTAAGTGTACCAGCTTGGCAAGTAACTGTGAAAACGAGAGAGGAGATTCGGACACTGCATTGCATTTAGGGTTGCCAAWTGATGTTAYTCACAAGAGGAAGGCAYCRGAGAGAGAAACATTTTCGAATGAGTCAGAAAGCCAAGTTGCTCTACTCTGA 771 0.4189 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCTDSSEVAIVECKAEKEDSKMVEALKDEIAKLERKQLRLLGKDLTGLCIKELQHLEQQLNQGLLAVKERKEELLMDQLEQSRVQEQRAMLENETLRRQIEELRCLFPVTERVVPSYLHYPHVERKNVYVDNGVVKCTSLASNCENERGDSDTALHLGLPXDVXHKRKAXERETFSNESESQVALL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1486 256 Coils Coil 149 176 - -
Amo13g1486 256 PANTHER MADS BOX PROTEIN 1 234 - -
Amo13g1486 256 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Amo13g1486 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo13g1486 256 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Amo13g1486 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo13g1486 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo13g1486 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo13g1486 256 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g1486 256 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g1486 256 Coils Coil 123 143 - -
Amo13g1486 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo13g1486 256 Coils Coil 86 113 - -
Amo13g1486 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 234 - -
Amo13g1486 256 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Amo13g1486 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo13g1486 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1486 Amo-Chr13 19936001 19939139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1486 1 251 MADS-box Gene Family AT5G13790 56.126 1.26e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo13g1486 K-box 3.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1486 - - zju:107417456 369.777