Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1464 ATGGGAACACAACCCGAACAACCATGTCCTGAGGAAGATGACGAGGAGATGCTGGGTCATGGAGCAACAATTTCGAGTCAGTCAATGTCAACAAGCAGGAGTGTGGGGTCACCGTCCAGCCGGAGTGAGCAGACAATGGCAACACCTGCTAGTGATAGCACTTTTCTCAGATTAAACCATCTTGACATTCATGGTGACGATGCTGGATCGCAGGGAGCAGTTGCTAGCAAGAAGAAAAAGAGAGGTCAACGGGCTGTAGGAGGAGATAAGAGTGGAAGAGGGCTCCGCCAGTTTAGCATGAAAGTTTGTGAGAAGGTGGAGAGCAAGGGACGCACAACATACAACGAGGTAGCAGATGAGCTTGTTGCTGAATTTGCTGACCCAAGCAACAGTGTTTTAGCCCCTGATCAGCAACAATATGATGAGAAAAATATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATCATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGCCAGAGTGATATTGAAGAACTAAAGACAGAACGTCTTGGGATTAGGAATAGAATCGAAAAGAAAGCAGCTTACTTGCAAGAGCTGGAAGAGCAATATGTAGGTCTTCAGAACCTCATAAAACGGAATGAGCAAGTATGTAGCTCAGGAAATGCTCCCAGTGGAGGTGTATCTTTGCCCTTTATTCTAGTGCAGACACGTCCGCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTTTCTGAAAGGCCTCAGAACGATAATAATGTAACGCCAAATGTTACAGATGGCGGTGAAGGTTCTAGCATGTCAGGGTTGTTTCATGTGCAGGCTCCTACCACAGTTTCAAACCCACCCGTGAGGCCTCCATCATCACCACCACTTCCTGGAATATTGAAGGCCAGGGTTAAGCCTGAGCACTAA 1032 0.4506 MGTQPEQPCPEEDDEEMLGHGATISSQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSVLAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQSDIEELKTERLGIRNRIEKKAAYLQELEEQYVGLQNLIKRNEQVCSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFSERPQNDNNVTPNVTDGGEGSSMSGLFHVQAPTTVSNPPVRPPSSPPLPGILKARVKPEH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1464 343 MobiDBLite consensus disorder prediction 21 55 - -
Amo13g1464 343 Gene3D - 85 178 IPR036388 -
Amo13g1464 343 CDD DP_DD 178 281 IPR014889 -
Amo13g1464 343 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Amo13g1464 343 SUPERFAMILY E2F-DP heterodimerization region 180 297 IPR037241 -
Amo13g1464 343 SMART DP_2 180 341 IPR014889 -
Amo13g1464 343 PANTHER TRANSCRIPTION FACTOR DP 22 343 IPR015648 GO:0005667|GO:0051726
Amo13g1464 343 Pfam Transcription factor DP 181 293 IPR014889 -
Amo13g1464 343 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Amo13g1464 343 MobiDBLite consensus disorder prediction 286 343 - -
Amo13g1464 343 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Amo13g1464 343 Gene3D Transcription factor DP 179 300 IPR038168 -
Amo13g1464 343 PIRSF Txn_factor_DP 6 343 IPR015648 GO:0005667|GO:0051726
Amo13g1464 343 PANTHER TRANSCRIPTION FACTOR DP 22 343 - -
Amo13g1464 343 Coils Coil 196 223 - -
Amo13g1464 343 MobiDBLite consensus disorder prediction 286 318 - -
Amo13g1464 343 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1464 Amo-Chr13 19651039 19654986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1464 91 289 E2F-DP Transcription Factor Family AT5G02470 55.500 1.04e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo13g1464 DP 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1464 K04683 - gmx:100797603 542.732