Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1462 ATGGAGAGGTACCTCAGAGACAACTTTTACGTTCAGCCCAAGCGCCCTACCTCCGACGCCCTCCGCCGATGGAGGTCCGCCGTCGCCGTCGTCAAGAACCCCCGCCGCCGATTCCGTATGGTCGCCAATCTCGCCCAACGCGCCGAAGCCGAACAGAAGCGCAAGAAGAGTCAGGAAAAGGTCAGGGTGGCTCTCTATGTGCAAAAAGCAGCATTGCAATTCATTAGCGCTGGAAACCGTAGTTCTGAGTACATGCTCTCCAAAGAGGTACAAGAAGCGGGTTTTGGAATTGAGCCAGATGAATTAGCGGAAATTGTTCATTCCCATGACACCAAATCTTTGGAGCGCAATGAAGGAGTTGAAGGTTTAGCTAAGCGTGTTTGTGTGTCTCTTCAAGATGGTATTCATTCACAAGATATTTCACACAGACAGAAGATCTTCGGTTGTAATCAGTACACAGAGAAGCCGCAAAGAAGCTTCTGGATGTTTGTTTGGGATGCAATGCAAGACTTGACACTCATGATCCTCATTGTCTGTGCTGTGATTTCAGTAGGTGTTGGAATATCAACGGAAGGTTTTCCAAAAGGTATGTATGATGGAGTTGGAATTATACTTTGCATTCTGTTAGTGGTATTTGTCACTTCAATCAGTGACTACAGACAGAGTTTGCAATTCAAAGATTTGGATAAAGAAAAGAAGAATGTCAGAATCCAAGTCACAAGAGAGGGTAAAAGACAGAAGGTTTCGATTTATGAACTTGTGGTGGGAGACATAGTTCATCTTTCAATAGGAGATGTAATCCCTGCAGATGGAATTTTCATATCAGGTTTCAGCTTGTTGATTGATGAATCAAGCTTATCTGGTGAGAGTGAAGCAGTGCATGTTGATCATGAGAAGCCTTTTCTTCTATCAGGGACATCCGTTCAAGATGGTTCTGCAAAGATGCTAGTGACTTCTGTTGGTATGAGAACTGAATGGGGAAAACTGATGGATACTTTGAATGAAGGAGGTGATGACGAGACACCACTTCAGGTCAAGCTCAATGGTGTTGCCACAATTATAGGAAAGATAGGACTTGGTTTTGCAGTCCTAACATTCCTGGTTTTGACTGGAAGGTACTTGTTGGATAAAGTAAAACATCATGAGATTGCTCATTGGTCCATGGATGATGCATCAAAGCTTCTCAATTTCTTTGCCACTGCTGTGATCATAATTGTTGTGGCAGTTCCTGAGGGACTTCCTTTGGCAGTCACACTAAGCCTTGCGTTTGCAATGAAGAAACTTATGAATGATAAGGCACTTGTAAGGCACCTTTCGGCATGCGAAACGATGGGCTCGGCCGGCTGTATCTGCACGGATAAGACAGGAACCTTGACGACAAATCACATGGTTGTTGACAAGTTATGGATATGTGAACAAACTAAGGCAATAAAAAAGGGTGATGGTGAGAGTGTCTTGAAGAATTTTGTTCCTGAAGAGATATTTGATCTCTTTCTGCAGTCTATATTTCAGAACACAGGCTCTGAGATTGTCAAAGGGGAAGATGGTAAGAACAAGGTCATGGGAACTCCCACGGAAACGGCATTGTTGGAATGCGGATTGATGTTGGGAGGTGATTCTAAATCTTACAATGACAAGTACAAGATAATGAAGGTTGAGCCTTTCAATTCTGAGAGAAAAAAGATGTCTGTGCTTGTGGCCCTTCCTGATGGCACCATCAACAAGTCTAGAGCATTTTGTAAAGGAGCATCAGAAATAGTTCTCAAGAATTGTAACAAGGTTATTAATGCAGATGGGAAAGTGGTGGACTTGAATGAAGAACAGAGAAAGAGCATCATAGAAGTAATAGATGGTTTTGCTTGTGAGGCTCTGAGAACACTCGGCATTGCCTTCAAGGATATGGAAGGATCTTCTTCTGAAAGTAATGGCATTCCTGAGGATAACTACACATTCGTAGCAATTATTGGAATCAAGGATCCAGTGAGACCTGGAGTTAAAGAAGCTGTGAAGACTTGTTTAGAAGCTGGAATCAATGTTAGAATGGTAACTGGTGATAACATAAACACTGCTAAAGCCATTGCTAAAGAATGTGGCATCTTGACAGATGGAATTGCTATTGAGGGACCAGAATTCAGGAATAAAAGCCAGCAGGAGTTGGAGGAGATCATACCAAAACTACAGGTGATGGCTAGGTCCCTGCCTCTTGACAAGCACAAATTAGTAACCCATTTGAGGAATGATTTTAATGAAGTTGTGGCAGTGACAGGTGATGGGACCAATGATGCTCCAGCATTACATGAGGCTGATATTGGACTCGCCATGGGTATTGCAGGGACAGAGGTTGCAAAAGAGAATGCGGATGTGATTGTAATGGACGACAACTTTGCCACCATAGTGAATGTTGCCAAATGGGGTCGTTCTGTTTATATAAACATACAAAAGTTTGTTCAGTTCCAATTAACAGTCAACGTTGTAGCTCTCATGCTAAATTTTGTTTCAGCATGTGTCTCAGGCTCTGCTCCTCTTACCGCTGTTCAAATGCTTTGGGTGAACATGATCATGGACACACTTGGCGCATTGGCATTGGCTACTGAACCTCCCCATGGTGGACTCATGAAGAGGCCACCTATTGGAAAGGACACCAAATTCATAACCCCTGTCATGTGGAGGAACATAATTGGTCAGAGTATTTATCAAACTATTGTCCTGTTGCTACTCAAATTTCGCGGCAAGCAGATTCTCAAGCTCAGTGATTCTGATTCTACCCTACTCAATACTGTCATATTCAACGCCTTTGTATTTTGCCAGGTGTTCAACGAGATAAATAGCCGTGACATGGAAAAGATAAATGTTGTAAGAGGCATGTTGAGCAGCTGGGTATTCCTTGTGGTGATAGCATCAACAGTAACATTTCAAGTGGTAATAGTTGAGTTTTTAGGAACATTTGCACAAACAGTGCCACTGAGTAAGGACTTGTGGTTATTCAGCGTGTTAATTGGTGCGGTTAGTTTAGTGATAGCTGTTGTCCTAAAATGCATTCCTGTTGGTACCACTGACTCCCATTATCAACCTGCTTCTCATGATGGCTACGAGCAGCTACCAAGTGGACCTGACATGGCATGA 3123 0.4304 MERYLRDNFYVQPKRPTSDALRRWRSAVAVVKNPRRRFRMVANLAQRAEAEQKRKKSQEKVRVALYVQKAALQFISAGNRSSEYMLSKEVQEAGFGIEPDELAEIVHSHDTKSLERNEGVEGLAKRVCVSLQDGIHSQDISHRQKIFGCNQYTEKPQRSFWMFVWDAMQDLTLMILIVCAVISVGVGISTEGFPKGMYDGVGIILCILLVVFVTSISDYRQSLQFKDLDKEKKNVRIQVTREGKRQKVSIYELVVGDIVHLSIGDVIPADGIFISGFSLLIDESSLSGESEAVHVDHEKPFLLSGTSVQDGSAKMLVTSVGMRTEWGKLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFAVLTFLVLTGRYLLDKVKHHEIAHWSMDDASKLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKLWICEQTKAIKKGDGESVLKNFVPEEIFDLFLQSIFQNTGSEIVKGEDGKNKVMGTPTETALLECGLMLGGDSKSYNDKYKIMKVEPFNSERKKMSVLVALPDGTINKSRAFCKGASEIVLKNCNKVINADGKVVDLNEEQRKSIIEVIDGFACEALRTLGIAFKDMEGSSSESNGIPEDNYTFVAIIGIKDPVRPGVKEAVKTCLEAGINVRMVTGDNINTAKAIAKECGILTDGIAIEGPEFRNKSQQELEEIIPKLQVMARSLPLDKHKLVTHLRNDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFATIVNVAKWGRSVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHGGLMKRPPIGKDTKFITPVMWRNIIGQSIYQTIVLLLLKFRGKQILKLSDSDSTLLNTVIFNAFVFCQVFNEINSRDMEKINVVRGMLSSWVFLVVIASTVTFQVVIVEFLGTFAQTVPLSKDLWLFSVLIGAVSLVIAVVLKCIPVGTTDSHYQPASHDGYEQLPSGPDMA* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1462 1040 CDD P-type_ATPase_Ca_PMCA-like 140 888 - -
Amo13g1462 1040 Gene3D - 134 334 - -
Amo13g1462 1040 Pfam haloacid dehalogenase-like hydrolase 449 769 - -
Amo13g1462 1040 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Amo13g1462 1040 Pfam Cation transporter/ATPase, N-terminus 117 183 IPR004014 -
Amo13g1462 1040 SUPERFAMILY HAD-like 450 860 IPR036412 -
Amo13g1462 1040 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 109 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Amo13g1462 1040 Pfam Cation transporting ATPase, C-terminus 840 1012 IPR006068 -
Amo13g1462 1040 Pfam E1-E2 ATPase 236 429 - -
Amo13g1462 1040 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Amo13g1462 1040 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Amo13g1462 1040 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Amo13g1462 1040 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Amo13g1462 1040 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Amo13g1462 1040 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Amo13g1462 1040 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1023 - -
Amo13g1462 1040 SFLD C1.7: P-type atpase like 433 807 - -
Amo13g1462 1040 Gene3D - 461 660 IPR023299 GO:0000166
Amo13g1462 1040 Coils Coil 41 61 - -
Amo13g1462 1040 Gene3D - 448 800 IPR023214 -
Amo13g1462 1040 SFLD p-type atpase 433 807 IPR044492 -
Amo13g1462 1040 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Amo13g1462 1040 PANTHER CATION TRANSPORTING ATPASE 3 1023 - -
Amo13g1462 1040 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 665 IPR023299 GO:0000166
Amo13g1462 1040 Gene3D - 17 76 - -
Amo13g1462 1040 SMART Cation_ATPase_N_a_2 93 188 IPR004014 -
Amo13g1462 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 721 843 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g1462 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g1462 1040 MobiDBLite consensus disorder prediction 1021 1040 - -
Amo13g1462 1040 Gene3D - 166 1013 - -
Amo13g1462 1040 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g1462 1040 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g1462 1040 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g1462 1040 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Amo13g1462 1040 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1014 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1462 Amo-Chr13 19571808 19578180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1462 59 1037 Primary Pumps ATPases AT3G57330 68.807 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1462 K01537 - gmx:100801260 1679.46