Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1452 ATGCATTTATTTGATATGATTATTGCATTGTTAGGTTCAGCACATGGATATCCCTGGTTCAAAGGGATAAGTAGCGAGCCAAGGGGCATGCTCCTCAAAATTCTTGTGCGCAATTGTGCTAAGTACATTGAATGTGGCAACATCTCAGATGCAGATTCAGCATTAGCAAAAATTTCTCACCTTGCTTCCTCAGAAGGTGATCGATTCCAAAGGCTAGCAACTTATTTCAGTGAGGCACTTACATGCCAACTTGTGAATAGATCATACCTCCATGGTGCACATAACATTCTATCAAAACCACTCTCAACTTTTGAAGACTCTTTTGCTAAGGGCTTATTCTTTGAACTCTATCCATTCCAAAGGGTATCTTATGCGGTTATAAATCAGGCCATTATTGAAGCCATGACAGGGCTTCAAGGTATTCATATACTTGATCTTAGTGCACCCCATGATGCTACTCAATGGGTCCTCTTTATACAGAGTTTGAAAGAGCGTTGTAGTTCTTTTTCTTCATCATCAACTAGACCACAACAACGACCATATTTGAAGATCACTTGTGTGCATACAAATCAGGAGGTGTTAGCCCAAATGAAGTTGCGGTTGACATTGGAGGCTGACAAGTTTTTCCAATTCGAATTCAGTGACATTGTGAGTACTTTAGAAAATTTAAACCTAGATAATTTGCCTATACTTAACGGAGAGCCTATTGCAATCAGTATTGTTCTTCAATTGCACCGCCTTTTAAGCACCGATGATCCACCTGTTCCAGTTGTAGTATCCAACCAATTCTTCCATCAACAAAGTTTTGCAGATGTGATTGCCAAGGACAGTTATAATAATAACAATCACAATGTCATAATTAATCAAAGTCCTAATTCGGCATTGGCACTAGCAACTCATCATCGTTTAACTCAAAGTCCAGTGCCTAAGATGGAGTGTTTTCTGCACGGCCTCTGGAAGCTCCAGCCCAAAGTTATGGTCATCATGGAACAAGAATCAAACGTCAACGGACAATCCTTAACGGATCGGGTTGACAAAGCCTTGGATTTCTACGATGCGTTTTTTAAATGCTTGGTAACGGCGCCGTCAGTGAAGAAGATCTTCTTTGAGAGAGCGATGTTGGGAGAGCAAATAAAGAATATAATTGCGTGTGAGGGAGCTGAGAGAAAAGAAAGGTATGAGTCGCTTAAGGCGTGGATCTCAAGGCTTGAACTTGCTGGGTTTTGCGCTGAAGCTATTAGCTTGGAGGGGATGTTAAGAGGAGTAACTGAATTGCAGAATTTTGCACATGGCTATAAGATTATTAGAGATGAAAAGTTTTTGTTTCTGTGTTGGAATAATAATCCACTCTTTTCTTTATCAGCCTGGAGATACTTGTGA 1380 0.4029 MHLFDMIIALLGSAHGYPWFKGISSEPRGMLLKILVRNCAKYIECGNISDADSALAKISHLASSEGDRFQRLATYFSEALTCQLVNRSYLHGAHNILSKPLSTFEDSFAKGLFFELYPFQRVSYAVINQAIIEAMTGLQGIHILDLSAPHDATQWVLFIQSLKERCSSFSSSSTRPQQRPYLKITCVHTNQEVLAQMKLRLTLEADKFFQFEFSDIVSTLENLNLDNLPILNGEPIAISIVLQLHRLLSTDDPPVPVVVSNQFFHQQSFADVIAKDSYNNNNHNVIINQSPNSALALATHHRLTQSPVPKMECFLHGLWKLQPKVMVIMEQESNVNGQSLTDRVDKALDFYDAFFKCLVTAPSVKKIFFERAMLGEQIKNIIACEGAERKERYESLKAWISRLELAGFCAEAISLEGMLRGVTELQNFAHGYKIIRDEKFLFLCWNNNPLFSLSAWRYL* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1452 459 PANTHER SCARECROW-LIKE PROTEIN 3 15 457 - -
Amo13g1452 459 ProSiteProfiles GRAS family profile. 23 457 IPR005202 -
Amo13g1452 459 Pfam GRAS domain family 35 457 IPR005202 -
Amo13g1452 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 457 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1452 Amo-Chr13 19446233 19448022 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1452 10 457 GRAS Transcription Factor Family AT1G50420 36.809 2.38e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo13g1452 GRAS 1.4e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1452 - - ahf:112772597 862.062