LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g1449	ATGCGTTTTGCTTTGTCTGTCTTAGTGAGTTCCCTGTTCCGTTGCACTGCATTCTTATGCGCAATGGCTAACAATGTCACTAGCCGGTTCCATCAATCTCTCACTCGAAATGCTCTTCGCTCTTATCTCGCCGAGTTCATGTCCACTTTCTTCTTTGTTCTTGCCGTTGTTGGTTCTGGAATGTCCGCACGGAAATTGATGCCTGATGCAACACTGAATCCGGCTACCCTTGTTGTGGTTGCCATTGCAAACGCTTTCGCCTTGTCGTCCGTGTTGTACACCGCATGGGACATCTCCGGTGGACACGTCAACCCGGCGATTACGTTTGCAATGGCAATAGGAGGCCATGTTAGTGTACCAACCGCTCTCTTTTATTGGGTTGCCCAACTTATAGCCTCTGTTATGGCTTGCCTTGTCCTTAGGGTCATCCTTGTTGGAATGCATGTTCCGACATACACAATTGCTGAAGAAATGACAGGGTTTGGAGCATCGGTACTAGAAGGTTTCTTGACATTTGTATTGGTGTACACAGTGTATGCAGCAAGGGACCCAAGGCGTGGTCCATTGAGTGCTACAGGACCACTTGTAATTGGACTCATGGCCGGTGCAAATGTGTTAGCCGCAGGTCCTTTCTCTGGAGGCTCAATGAACCCAGCATGTGCTTTCGGCTCTGCCGCCATTGGTGGCAGTTTCAGGAACCAAGCCGTGTATTGGGTTGGTCCCTTGCTTGGTGCTGCCGTGGCTGGCCTTCTCTATGACAATGTAGTCTTCCCAGTAACCGCAACAACTGGAGTTTCTGATGGACTTACTGTGTGA	816	0.4963	MRFALSVLVSSLFRCTAFLCAMANNVTSRFHQSLTRNALRSYLAEFMSTFFFVLAVVGSGMSARKLMPDATLNPATLVVVAIANAFALSSVLYTAWDISGGHVNPAITFAMAIGGHVSVPTALFYWVAQLIASVMACLVLRVILVGMHVPTYTIAEEMTGFGASVLEGFLTFVLVYTVYAARDPRRGPLSATGPLVIGLMAGANVLAAGPFSGGSMNPACAFGSAAIGGSFRNQAVYWVGPLLGAAVAGLLYDNVVFPVTATTGVSDGLTV*	272

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g1449	271	PANTHER	AQUAPORIN TIP5-1-RELATED	24	263	-	-
	Amo13g1449	271	Pfam	Major intrinsic protein	37	252	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1449	271	ProSitePatterns	MIP family signature.	102	110	IPR022357	-
	Amo13g1449	271	PRINTS	Major intrinsic protein family signature	198	220	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1449	271	PRINTS	Major intrinsic protein family signature	121	140	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1449	271	PRINTS	Major intrinsic protein family signature	84	108	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1449	271	PRINTS	Major intrinsic protein family signature	166	184	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1449	271	PRINTS	Major intrinsic protein family signature	40	59	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1449	271	PRINTS	Major intrinsic protein family signature	235	255	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Amo13g1449	271	SUPERFAMILY	Aquaporin-like	31	259	IPR023271	-
	Amo13g1449	271	PANTHER	AQUAPORIN-8	24	263	IPR034294	-
	Amo13g1449	271	Gene3D	Glycerol uptake facilitator protein.	23	264	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g1449	Amo-Chr13	19430269	19431349	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g1449	27	268	Major Intrinsic Protein MIP	AT3G47440	67.355	2.31e-114	327

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g1449	K09873		-	gmx:100801448	394.815

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo13g1449	13	19430269	19431349	Amo13g1449	13	19430269	19431349	ECH