Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1411 ATGGCTCGTGGAAGAATTCAGTTGAAGAGAATAGAGAACCCTGTGCACAGGCAAGTTACCTTCTGCAAGCGCCGAGCTGGCCTTCTCAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGACGCTGAAATTGGCCTTGTCATTTTCTCCTCTCATGGCAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGGTGATAGAGAGGTACATGAAGTTCACTACTGGGGCGGCTCAGCCTGAAGAACCACCAACTGAACCGCATCATCATCCTCTTGATGCTAAAGAGGAAGCGGATGTTCTAAAACAGGAAATTGACACATTGCAAAAGGGAATCAGTTATTTGTTTGGAGGAGGAACTGGGACAATGACAATCGATGATTTACAAATCTTAGAGAAGAATCTCGAGACTTGGATTTATCAAATTCGCTCAATGAAGATGAACCTCATGTTACAAGAAATTCAAGATTTGAGAGACAAGGAGGGTACACTCAAAGCAGCAAACAAGTTTCTCCATGATAAGATTTTGGAGAATACAACTGCATTTACTAACTTTGCTCCATTTGCTACTGACTCAACTTACCCACTAACTATACAAGATGGGATTTTTCCAGCTCTAGGAAATCTTGTATAA 633 0.4281 MARGRIQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSSHGKLYELATKGTMQGVIERYMKFTTGAAQPEEPPTEPHHHPLDAKEEADVLKQEIDTLQKGISYLFGGGTGTMTIDDLQILEKNLETWIYQIRSMKMNLMLQEIQDLRDKEGTLKAANKFLHDKILENTTAFTNFAPFATDSTYPLTIQDGIFPALGNLV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1411 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo13g1411 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo13g1411 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo13g1411 210 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g1411 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Amo13g1411 210 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 203 - -
Amo13g1411 210 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Amo13g1411 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 203 - -
Amo13g1411 210 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Amo13g1411 210 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Amo13g1411 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo13g1411 210 Pfam K-box region 88 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo13g1411 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo13g1411 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1411 Amo-Chr13 18984088 18988804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1411 1 203 MADS-box Gene Family AT1G71692 62.326 6.54e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo13g1411 K-box 7.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1411 - - gmx:100783345 304.293