Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1410 ATGGAGAATATGAATAGTTTTTGTCATGTTCCCCCGGGTTTTAGATTCCACCCGACGGATGAAGAACTTGTTGATTACTACCTTAGGAAGAAGGTTAGTTCAAGGAAGATTGAGCTTGATGTAATCAAAGATGTTGACCTCTACAAAATTGAGCCATGGGACCTTCAAGAGATATGCAGGATAGGAAGAGAAGAGGAGAATGAATGGTATTTCTTTAGCCACAAGGATAAGAAGTATCCAACAGGAACAAGAACAAATAGGGCAACAGCAGCTGGGTTTTGGAAAGCAACGGGAAGAGACAAAGCTATATATTCAAAGCATGATCTCATAGGGATGAGGAAGACATTAGTCTTTTATAAAGGGAGAGCTCCTAATGGACAAAAATCGGATTGGATCATGCACGAATATCGCCTTGAAACCGATGAAAATGCCGCACCACAGGCAATATTCAAGAAGAGAGTAACAACGATGCGTAAAATGATGATGAGAGAGCATGATGAGTCTCCTAATTCTTCTTGTTGGTACGATGACCAAGAATTCATGATGATGGAATCGCCAACAAAGCAACAATCCTCTATTCTTCTTCATCAATCCACCAATAACCATTCCAATTTGATGCAGCTACCACCGTATCCTCTCATCAAGAAAGAGCTTCATCACCCATCATCATCATCATCGTCATACCCCTTCCTTCAGCTTCCACTCTTAGAGTCTCATCAACAATCTGCTGCTGCACCTTCCTCCATTTCTGAACAACTCATCATGCCACCACCAATTGGAGGAGGAGAACAAGTCCCGAGTTTTCAGTCATTCTTCAATAATGAACAACAAGAAGTAGGAGTTCTTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGATGATAATCATGCATCCTCTAATAGTATTGTACAAGATCTCACACAGGAAATTGTTATGGTGCCTCACAATGATGCTGCATCAACATCAAACTCCCTCACCTCCCCAATTGATTTGTGGAAATAG 1017 0.41 MENMNSFCHVPPGFRFHPTDEELVDYYLRKKVSSRKIELDVIKDVDLYKIEPWDLQEICRIGREEENEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENAAPQAIFKKRVTTMRKMMMREHDESPNSSCWYDDQEFMMMESPTKQQSSILLHQSTNNHSNLMQLPPYPLIKKELHHPSSSSSSYPFLQLPLLESHQQSAAAPSSISEQLIMPPPIGGGEQVPSFQSFFNNEQQEVGVLDWRVLDKFVASQLSQDDNHASSNSIVQDLTQEIVMVPHNDAASTSNSLTSPIDLWK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1410 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 7 314 - -
Amo13g1410 338 SUPERFAMILY NAC domain 7 144 IPR036093 GO:0003677|GO:0006355
Amo13g1410 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 314 - -
Amo13g1410 338 ProSiteProfiles NAC domain profile. 10 163 IPR003441 GO:0003677|GO:0006355
Amo13g1410 338 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
Amo13g1410 338 Gene3D NAC domain 19 192 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1410 Amo-Chr13 18977664 18978874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1410 4 338 NAC Transcription Factor Family AT1G12260 53.203 2.79e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g1410 NAM 9.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1410 - - gmx:100815845 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1410 13 18977664 18978874 Amo13g1410 13 18977664 18978874 ECH