Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1405 ATGGCGAGGAGCGGCAGCCTGAGGGGGAGAGACGCGGCGGCTATGCAGGACTGCATGGAGGTTTTGGCTGATTCCGTGGAGGAGCTCACAAAATCGATTGGAGAAATGAGTCATTTGAGGACAAGTAATTTTGAAGGAACCATGAGTGATGTTCAAACTTGGGTCAGCGCTGCTTTGACCGATGATACCACCTGCACTGATGGCTTCCAACAGACCCCTAGTTCTGTCGCCGGAGATGTTAAGACCGCCGTCCGTGGCCGCATCATCGAGGTGGCGCAACTCACTAATCCTTTTCTGCTCTGCAACACTTCACTCGGCCTCGCCTTTAAGGCGGCTCGCTCCGCCTCCACCACCGTCTCCAAGATCCTCAAGAACAATAGTAGCAGCCTCACGACGCCGGCCAAAGCCGTGGTTCGTGACTGCTACGGCAACCTCAAAGATTCGGTTGAGCAGATAAAAGATTCTATTTCTGAAATGGGGAACTTGTATGAGAGTAGCGACAAAGATTTCAAGATGAGTAACATAAAGACATGGGTGAGTGCTGCTATAACGAATTATAATACGTGTTCGGATGGATTTGAAGAACAGAGTGTGGATGGTGATGTTAGAAATAAGATCAATAAGCTTGTTTTGAATGCTGCGAGGATGACTAGTAATGCATTGTATTTCATCAACCACCTCGTATATTGA 690 0.4855 MARSGSLRGRDAAAMQDCMEVLADSVEELTKSIGEMSHLRTSNFEGTMSDVQTWVSAALTDDTTCTDGFQQTPSSVAGDVKTAVRGRIIEVAQLTNPFLLCNTSLGLAFKAARSASTTVSKILKNNSSSLTTPAKAVVRDCYGNLKDSVEQIKDSISEMGNLYESSDKDFKMSNIKTWVSAAITNYNTCSDGFEEQSVDGDVRNKINKLVLNAARMTSNALYFINHLVY* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1405 229 Pfam Plant invertase/pectin methylesterase inhibitor 10 96 IPR006501 GO:0004857
Amo13g1405 229 Pfam Plant invertase/pectin methylesterase inhibitor 100 221 IPR006501 GO:0004857
Amo13g1405 229 PANTHER 21 KDA PROTEIN-LIKE 95 227 - -
Amo13g1405 229 PANTHER 21 KDA PROTEIN-LIKE 2 96 - -
Amo13g1405 229 PANTHER PECTINESTERASE INHIBITOR-LIKE 2 96 - -
Amo13g1405 229 CDD PMEI-like_3 95 227 - -
Amo13g1405 229 SMART PMEI_2 87 223 IPR006501 GO:0004857
Amo13g1405 229 SMART PMEI_2 2 83 IPR006501 GO:0004857
Amo13g1405 229 CDD PMEI-like_3 1 95 - -
Amo13g1405 229 PANTHER PECTINESTERASE INHIBITOR-LIKE 95 227 - -
Amo13g1405 229 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 82 IPR006501 GO:0004857
Amo13g1405 229 TIGRFAM PME_inhib: pectinesterase inhibitor domain 96 227 IPR006501 GO:0004857
Amo13g1405 229 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 95 IPR035513 -
Amo13g1405 229 Gene3D Invertase/pectin methylesterase inhibitor family protein 96 228 IPR035513 -
Amo13g1405 229 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 6 99 IPR035513 -
Amo13g1405 229 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 96 227 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1405 Amo-Chr13 18798389 18813643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1405 96 223 Carbohydrate Esterase AT3G05620 27.586 2.54e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1405 - - aip:107634201 268.855