Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1403 ATGACGTCAACACCTACGCCACCACGCCACGCCGAACCCTCCTCCTCTTCCTCTTCCTCTTCCGCCAAGTTCAGGCTTCAGAAGATTCCTCCGATTCCGTTCCGAAGGAAGTCCAAATCTAAGGCCGAAGCAAACAGATTGGCCGAGGAAGAACATAAAAAGCAGCAGCAGAAGCTGCAGCAGGAGAAGCAAGAACAACAACAAAAACAAAAACAAAGCAAGGTGCAGAAAGACATGCAGGATTGCGATTCCGGAGAACCCTCCATTCTTCTCGCGTCTTCTTTAGGGCTTAATCAAATTCGCACTCGCTCTTCTTCTTCCCCTCTCCGCCATTGCTCCTCCGTTGGCGCCTCTTCCTTTCTCACAAACGACGTCGTCTCAAACATTGACCACATTCCTACAACCAAACCTACTAAGGAACCATGGGAGAAAGTTCATTGGAGTCAATCCAAATCGTTGAAGGCTCATTCTCAGCTGCTTCCTGTTCTGGAGGGTAATCATGCAGCTTTTGCCAAAGAAATGAATTCCCCACGTTTTCAGGCAATCCTGCGTGCAACAAGTGGCCGCAGAAGGACACAACCTGATATCAAAAGCTTTTCCCATGAACTCAACTCCAAAGGTGTTCGACCTTTTCCAATTTGGAAACACCGTGCATTAGGCCATATGGAGGAAGTCATGGTGGCAATTAGAGTTAAGTTCGAAAAATTGAAGGAAGAAGTTGATTCGGACTTGGGTGCTTTTGCCGGAGATTTGGTGGGTATTCTTGAAAAAATTTCAGGGTCTCATCCTGAATGGGCAGAGAGCTTGGAGGATCTCTTGATTGTTGCTCGACAATGTTCAAAGATGTCAGCTACCGAGTTTTGGGTCAAATGTGAAACTATTGTTCAAAATTTAGATGACAAACGTCAAGATTTACCTGTGGGGATCCTCAAGCAAGCTCACACACGCCTACTTTTTATCCTCACTCGTTGCACCCGTCTTGTGCAATTCCACAAGGAAAGTGGCTATGAACAAGATCACATTCTGGGTCTTCACCAGCTCAGCGATCTTGGTGTATATCCAGAGGAGCTGTTGCAGGCTGCACAACAAAATGCTGATGCTCCAATTGGTGGACATGACATGGCTGACCTGCGGAAAAAGTCAAAAGGAAAAGAGAAAAACAAATCAAAGACTACGAAATCTCAAGCTAACGAACAAAGAGTTATGAGTGGCAATGCGGAGGAGGATAGTACAACAAAAAATAGTTCCACTCCAAATAGCTATAGGATGGCTTCTTGGAAAAGGTTTCCAGCAGCTATTGACAAAAAGCAAAAGGATGAAGATGATGGAGATTTCCCCTCAAAAGGTGATATGGATCATTCGCTGGTCAAAGAACAGAATTCTGAAAATTTGGATGCTATGTCATGTCAACCTGAACATTCTGTGTCATCGTCAAGGACACGAAAGGGTTCTTGGGGATTCTGGGGAGATCAACAAAATCTAACATATGAAGATTCAATGATCTGCAGAATTTGTGAGGTTGAAATACCAATTGTACATGTGGAGGAGCATTCTCGAATATGCACAATTGTTGATAGATGTGATTTGAAAGGCTTAACTGTAAATGAACGGCTTGAAAGAGTTTCTGATACTATTGAAAAGATATTGGAATCCTGGACACCTAAAAGCACCCAAAGTACCGAAATTGCAGGAGACAGTTTTGAGGTTTCTAGAATGTCTACATCAAGTGTGCATGAAGAGTTCAGTGAGTTAACTCTAGAAAGAAATAACATCTCTTCTAGATGCTCTGAAGACATGCTTGACTCTACCAATGAAACTGACAATACATTTGTTATGGATGATGTGCACCTCCCATCCGAAATATCGTGTGAACCGCATATCTATTTAAAATCTGATCATGGGACAAAAATATCTTCAACTGGAAGCTTGACACCAAGATCCCCTTTGATAACACCACGAACCAGTCAGATAGAAGTGTTATTAAGTGGAAGAATAGCAATATCTGAATATGAGAGTTACGACCAGATTAATAAGCTAGTGGAAATAGCTCGTTCTGTTGCAAATGTGAATGCCTGTGACTACAGTTCTTTGGAGATTATGCTTGATCGCTTAGAAGACCTGAAATATGCAATTCAAGACAGAAAAGTGGATGGCCTCATTCTGGAGACTTTTGGACGACGTATAGAGAAACTTCTACAGGAGAAATATATATCTCTTTGTGGGCAGATAGAAGATGAAAAGGTAGACTCGTCAAATATCATGGCTGAAGAAGAGAGTGCAGTGGAAGATGAAGTTGTACGTAGCCTTCGTGCTAGTCCAATTAATCCTTGTTCCAAGGACCGAACCTCTATAGAAGACTTTGAAATAATAAAGCCAATAAGTAGGGGTGCATTTGGACGAGTTTTTCTTGCCCGGAAAAGGGCAACTGGTGATTTATTTGCTATAAAGGTTTTGAAAAAGGCAGATATGATACGTAAAAATGCAGTTCAAAGTATTTTGGCTGAGCGAGACATCCTCATATCTGTTCGAAATCCTTTTGTGGTCCGATTTTTCTACTCTTTCACATGTAGAGAAAATCTCTATCTGGTTATGGAGTATTTGAATGGTGGAGATCTTTATTCTCTGTTAAGAAATTTAGGTTGCTTAGATGAAGATATGGCTCGTGTCTATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATACCTTAAATGTGATTCACAGAGATTTGAAGCCAGATAACTTGTTGATTGGTCAAGATGGTCACATTAAGTTGACTGATTTTGGACTCTCTAAAGTTGGTCTTATCAACAGCACAGATGACTTATCAGCACAATCATTTTACAATAATGGTTTTCTAAGAGATGATGAACTAAAACCTCAACATTATTCTAAAAGGGAAGGACGTCGAAAGCATTCAATAGTTGGCACCCCAGATTATTTGGCACCAGAAATACTTCTTGGGATGGGACATGGTGCAACTGCAGATTGGTGGTCCGTGGGTGTGATTCTTTATGAGCTTATTGTGGGTATTCCACCATTCAATGCAGAACATCCCCAGCAAATTTTTGATAACATAATCAACAGAGATATACAATGGCCCAAGGTTCCTGAGGAGATCAGCTTTGAAGCATATGATTTGATTAACAAATTATTGAATGAAAATCCAGTCCAAAGGTTAGGTGCAACAGGAGCTACAGAGGTTAAACGCCACTCGTTCTTCAAGGATATTAATTGGGATACTTTAGCAAGGCAGAAGGCTATGTTCATACCATCAGCTGAAGCTCTTGATACAAGTTATTTTATGAGCCGGTACATTTGGAATCCAGAGGATGAACATTGTACTGGGGGTAGTGACTTTGATGACATTAGTGAAACAAGCAGCACCTCTGGCAGTGACTTATTAGATGAAGATGGTGATCAATGTGGTAGTTTGGCAGAATTCAGTGCTCCTCCTCTTGAGGTGCAATACTCCTTTAGCAATTTCTCATTTAAGAACTTGTCTCAGCTAGCATCTATCAATTATGATCTGGTGATTAAGAACTCCAAAGAATCGCCCGATAACTCCAATCCATCAGTTTCATGA 3588 0.4133 MTSTPTPPRHAEPSSSSSSSSAKFRLQKIPPIPFRRKSKSKAEANRLAEEEHKKQQQKLQQEKQEQQQKQKQSKVQKDMQDCDSGEPSILLASSLGLNQIRTRSSSSPLRHCSSVGASSFLTNDVVSNIDHIPTTKPTKEPWEKVHWSQSKSLKAHSQLLPVLEGNHAAFAKEMNSPRFQAILRATSGRRRTQPDIKSFSHELNSKGVRPFPIWKHRALGHMEEVMVAIRVKFEKLKEEVDSDLGAFAGDLVGILEKISGSHPEWAESLEDLLIVARQCSKMSATEFWVKCETIVQNLDDKRQDLPVGILKQAHTRLLFILTRCTRLVQFHKESGYEQDHILGLHQLSDLGVYPEELLQAAQQNADAPIGGHDMADLRKKSKGKEKNKSKTTKSQANEQRVMSGNAEEDSTTKNSSTPNSYRMASWKRFPAAIDKKQKDEDDGDFPSKGDMDHSLVKEQNSENLDAMSCQPEHSVSSSRTRKGSWGFWGDQQNLTYEDSMICRICEVEIPIVHVEEHSRICTIVDRCDLKGLTVNERLERVSDTIEKILESWTPKSTQSTEIAGDSFEVSRMSTSSVHEEFSELTLERNNISSRCSEDMLDSTNETDNTFVMDDVHLPSEISCEPHIYLKSDHGTKISSTGSLTPRSPLITPRTSQIEVLLSGRIAISEYESYDQINKLVEIARSVANVNACDYSSLEIMLDRLEDLKYAIQDRKVDGLILETFGRRIEKLLQEKYISLCGQIEDEKVDSSNIMAEEESAVEDEVVRSLRASPINPCSKDRTSIEDFEIIKPISRGAFGRVFLARKRATGDLFAIKVLKKADMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDMARVYIAEVVLALEYLHTLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAQSFYNNGFLRDDELKPQHYSKREGRRKHSIVGTPDYLAPEILLGMGHGATADWWSVGVILYELIVGIPPFNAEHPQQIFDNIINRDIQWPKVPEEISFEAYDLINKLLNENPVQRLGATGATEVKRHSFFKDINWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCTGGSDFDDISETSSTSGSDLLDEDGDQCGSLAEFSAPPLEVQYSFSNFSFKNLSQLASINYDLVIKNSKESPDNSNPSVS* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1403 1195 SUPERFAMILY Protein kinase-like (PK-like) 784 1103 IPR011009 -
Amo13g1403 1195 Coils Coil 44 76 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 1117 1137 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 365 482 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 394 423 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 372 393 - -
Amo13g1403 1195 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 1194 - -
Amo13g1403 1195 Pfam Protein kinase domain 787 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1403 1195 CDD STKc_MAST_like 793 1080 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 1 25 - -
Amo13g1403 1195 Gene3D Transferase(Phosphotransferase) domain 1 871 1093 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 429 459 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 1 88 - -
Amo13g1403 1195 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 21 1194 - -
Amo13g1403 1195 ProSiteProfiles AGC-kinase C-terminal domain profile. 1076 1175 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo13g1403 1195 MobiDBLite consensus disorder prediction 1121 1136 - -
Amo13g1403 1195 Gene3D Phosphorylase Kinase; domain 1 785 1102 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 36 81 - -
Amo13g1403 1195 MobiDBLite consensus disorder prediction 460 482 - -
Amo13g1403 1195 ProSiteProfiles Protein kinase domain profile. 787 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1403 1195 SMART serkin_6 787 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1403 1195 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1403 Amo-Chr13 18767981 18774765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1403 2 1194 AGC Kinase Gene Family AT5G62310 60.984 0.0 1439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Amo13g1403 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1403 - - gmx:100817975 1762.27