Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1395 ATGGGTTCTTCTAATAACGGTGGTGTGCCACCGGGGTTTCGATTTCATCCAACCGATGAGGAATTGCTTCATTACTACTTGAAGAAGAAGGTGTCGTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTCGACCTCAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGCAGAATAGGGTCAACACCACAAAACGAGTGGTATTTCTTCAGCCACAAGGATAGAAAGTACCCAACAGGGTCAAGGACAAACCGAGCAACGAACGCAGGGTTCTGGAAAGCCACGGGAAGAGACAAGTGCATAAGGAACACCTACAAGAAGATTGGGATGAGAAAGACACTTGTGTTCTACAAAGGTAGAGCCCCTCATGGCCAGAAGACTGATTGGATAATGCACGAGTACCGCCTTGAAGATTCCAATGATCCACAAGCAAATGCCAACGAAGATGGGTGGGTGGTGTGCAGGGTGTTCAAGAAGAAGAACCTATTCAAGATTGGAAATGAAGGAGGTGGTGGCTCCACACACACCTCATCGGACCAGCAACTCAACAACTCAACGGCCACCAATGCTCGTTCCTTCATGCAAAGGGAAAACCACTACCTACTGCAAAACCCTAGGAATGGGAACCCATCCTCTTCATCCTCAGGCTTTGATGAACTCGATAAACCCGAGCTCGGTCTCCATCACTATCCTCACATGCAAAACCCACACTATTCACTCTTCCATCACTCCCAACCACTTCTTCATCCCCAGGCCCACAAGCCCATCGTCTATGACTACTCTTATGCACCCGCCCTTCCTTCAGACCCTCCTGTCATCGCTAAGCAGCTCATGACTAACCCTAGAGACTGCGATAGCGGTGGCAGCGAGGGTCTGAGGTACCAGCAGGTTTCCGAGCCTGGTATGGAGGTTGGATCATGTGAACAAGCCCAGGAAATGGGCGCCGCAAGAGGAGGAGGAGAAGGAATGAATGAATGGGGTGTGCTTGATAGGCTTGTAACCGGGAACCTTGGAAATGAAGATTCAGCCAACAAAGGGATTAGGTTTGAAGATGCAAATCCACATCAGATTAACCAGCTTTCTTTGAGGGGAGAGATGGATTTCTGGGGCTATGGGAAACAATAA 1128 0.4867 MGSSNNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDSNDPQANANEDGWVVCRVFKKKNLFKIGNEGGGGSTHTSSDQQLNNSTATNARSFMQRENHYLLQNPRNGNPSSSSSGFDELDKPELGLHHYPHMQNPHYSLFHHSQPLLHPQAHKPIVYDYSYAPALPSDPPVIAKQLMTNPRDCDSGGSEGLRYQQVSEPGMEVGSCEQAQEMGAARGGGEGMNEWGVLDRLVTGNLGNEDSANKGIRFEDANPHQINQLSLRGEMDFWGYGKQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1395 375 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Amo13g1395 375 MobiDBLite consensus disorder prediction 203 219 - -
Amo13g1395 375 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Amo13g1395 375 MobiDBLite consensus disorder prediction 203 225 - -
Amo13g1395 375 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Amo13g1395 375 PANTHER PROTEIN BEARSKIN2-LIKE 5 244 IPR033519 -
Amo13g1395 375 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 244 - -
Amo13g1395 375 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1395 Amo-Chr13 18578038 18580040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1395 3 371 NAC Transcription Factor Family AT1G33280 52.646 2.23e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g1395 NAM 2.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1395 - - adu:107477630 761.911