Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1393 ATGGTGGTCAACGAGAGGCCTACGAAGAGGATGAAGAGAAGAGTAACCGCCGATCTCCACGACTTTCTCACTTTCCCTTCCGCCGCCGGCGCTTCCTTGGACTCACCCTTTCGCAACTGTGTCCAGCGGTTCCTGGCAGACCATGGTCGCATAACGTTTCCGCCTTCACTCTTCCCGGCGCTGATGACGTGGCAGATCTTGTTCCGGGTTGGTGACCTTGTCGAAGGCCCTGATCTCTCGCCTGCGGTGGTCACGCTTGACATTGTGGAGGAAGATGTCACGCGCTCTCGAAGTTCAGTGTACTGTGACCAGTGTCGAGTCGTTGGGTGGAGCGGTCACCCGGTCTGTCGCAAGCGGTATCATTTCATTATCCGGGCTGCCAGTAAATCCATTGAGTCTTACCAAAGACCTTGTTCCAGATGTGAAAATCTTGTCCAACTATCTGAACCAAGGTGTAAATCATGTGACTTCAACATTACTGTGGATGATCTTGAGGATTGGGTGTATCAACAAATCGACGACAACACCCATCTCCTGCATGGTGTTGTCCACTCCAATGGTTATGGTCACCTGCTTACTCTCAATGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGATTTGATATTATGGGATTTTGGGATAGACTATGTTCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGATTGGAATATCGAGTGCTCCATGCAATCACCAATAGCCATTCGTGGTATGGCAATTGGGGTTATGAATTTGGAAATGGCAGCTATGCTCTTACACAAGATGCCTACCAGAAAGCAGTGAATACCCTGTCAGATATGCCCTTGTCCTCATTTTCATTCCAGGGTCGGGGACCACGAAGCCGCCTTCAGTGTGTTATTTCTCTTTACCAGTCGTTGGCTGAAACTGAACTTCTAACAATCAAAGACCTCTTCTCCTTTTTGTTGACATTGGTTCATGAATTTCACAAGCCGATGACGAAAAAAATATCTAAACAGGATGAAGGCTCCAACAAATGTAATTTATTGTGTGCTTGGACAAGACATGATGTTGAGGATGTTCAACAGGCTTTGATTAAGGTATTGCTTGCATCAGCTTCCTGTAGGGAGGTCAAATGGGTTGCTAGACGTGTTCTCAAGGGTGCAGTTTGCAGGGGTGTTTCATCTCCGGAGCTTCTAGACTACAGTCTTAAGCATTTGGAAGGAAAATTAGCTGCCAACGGAATGGTAGTTGCTACACGATGCAATCCAAATACTAGTGCTATAGAATTCAGGCTAGAACCGTTCTGTGATGGATTTACGCGAAATTCAAGCCATCCATCAGAAGAGCAAGTCATATCCGATCTGGCATTTTTATTTGATTCGATAATTCACCCAGACAAAATGGTGAGCTATAGACCCAAGGTTATGAGGAAAAGCGTGGCTGATTCAGCAAGGAAGCTTCTTGACTGTAAGCAGTTTGTGAAAGAGTACAAGCCAGAGGTGGCCATGGAACAACCTCCGGTCATCAGACTGTGGTGTCAGGTTGAACTTTCTGATCAGCCGAAAGATGATCCATCCCCGCCACCAGAACTAATCGTTTTGCCTTTGAGTGCTACTGTTGCTGACCTTAAGAGGGAGGTCACTAGTGCTTTTCAAGAGGTGTATGCAATGTTCAAGAGGTTTCAAGCTGAGGAAGTAATAGGGTATGGTTCAATTAGTGACTCGCTCACCTTAAAATTCTTGCTTGGAACAAGTGCGATGGTCAAAATTCAAGGCAAGTGTCCAGCCAAGTATGGTCTAAGCCGCTTCCGAATGGAACGGGGTACAGAGACATGGAGAGTTGACTGCCCCTGTGGGGCTAAGGACGATGATGGAGAAAGAATGTTAGCATGTGATACTTGCAGTGTTTGGCAGCATACGAGATGCGCGGGAATTGATAATTGTGATGCAATACCTTCTAAGTTTGTGTGTCTTAGATGCCTTAGCTCGTACCGTCAGGAAGCTGTAAATTTGCCAGACTCCGATGTTGAAGCTAACAAGTCTTACAAATTATCGAATGCTTCTTGCAAAGATGAAGCAGTGGCAACGGACTGTGCAGCAGTTGCTTGTAACATAACTGTAGATTTTGGTGTACGATGA 2139 0.4605 MVVNERPTKRMKRRVTADLHDFLTFPSAAGASLDSPFRNCVQRFLADHGRITFPPSLFPALMTWQILFRVGDLVEGPDLSPAVVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAASKSIESYQRPCSRCENLVQLSEPRCKSCDFNITVDDLEDWVYQQIDDNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGFDIMGFWDRLCSAISVRKVSVMDLSKKFGLEYRVLHAITNSHSWYGNWGYEFGNGSYALTQDAYQKAVNTLSDMPLSSFSFQGRGPRSRLQCVISLYQSLAETELLTIKDLFSFLLTLVHEFHKPMTKKISKQDEGSNKCNLLCAWTRHDVEDVQQALIKVLLASASCREVKWVARRVLKGAVCRGVSSPELLDYSLKHLEGKLAANGMVVATRCNPNTSAIEFRLEPFCDGFTRNSSHPSEEQVISDLAFLFDSIIHPDKMVSYRPKVMRKSVADSARKLLDCKQFVKEYKPEVAMEQPPVIRLWCQVELSDQPKDDPSPPPELIVLPLSATVADLKREVTSAFQEVYAMFKRFQAEEVIGYGSISDSLTLKFLLGTSAMVKIQGKCPAKYGLSRFRMERGTETWRVDCPCGAKDDDGERMLACDTCSVWQHTRCAGIDNCDAIPSKFVCLRCLSSYRQEAVNLPDSDVEANKSYKLSNASCKDEAVATDCAAVACNITVDFGVR* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1393 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 667 IPR013083 -
Amo13g1393 712 SUPERFAMILY FYVE/PHD zinc finger 605 663 IPR011011 -
Amo13g1393 712 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 680 - -
Amo13g1393 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Amo13g1393 712 SMART PHD_3 615 661 IPR001965 -
Amo13g1393 712 ProSitePatterns Zinc finger PHD-type signature. 616 660 IPR019786 -
Amo13g1393 712 Pfam PHD-finger 616 662 IPR019787 -
Amo13g1393 712 CDD PHD_MMD1_like 615 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1393 Amo-Chr13 18551858 18554645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1393 80 660 PHD Transcription Factor Family AT5G22260 27.840 7.34e-84 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo13g1393 PHD 3.8e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1393 - - gmx:100780558 1145.95