Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1389 ATGACTCCAGTGAATTTGGCAGGGCAGTTCGGAGACACCACATACACCAAGGTTTTTGTTGGAGGCTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAATACTTTGAGCAATTCGGTGAGATCTTGGAAGCTGTTGTCATCACTGACAAAGCCACCGGAAGATCTAAAGGCTACGGTTTTGTCACGTTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTAATTGATGGAAGAAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAAGTGGAAGGAACTTTAGAGTAATGGGGTCTTTCCAGACAGGGTTTGGAGGGGGAGTGGGATCAGCTTTTCCATCGGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCATATAACGTTTATGGGTACTCTCCTTACTCACCGGATTACACTTACCCCACGAGCTACTACAGTGTGTATGGAGGTGCAGCAACAGCACAGTACCCAGTGTATGGAACGGGACACGCTGGAGGAATGATGACGGGTGCCGGGGCAGCAGCGGCGGCGGCAGCAGCCACGGCGTTTTATCCGTATATGCAGTACGGAGGAGAAGGGAGTGGCGGAGGTGGATCAACCGGCGGGAGCTATACTACTTCAGGGCAGGGTTATGGTGTGAATTATCCGCCTCATCAACTGTTTCAGTATTCTCCGATTGCTTCAACCGGTGGCTATGCTCAGCACTATGCAACTCCCATGTCCCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACAATGGCTCTTCAAGCTCCAATTCCTCATCGCTAG 855 0.5135 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGSGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGGAATAQYPVYGTGHAGGMMTGAGAAAAAAAATAFYPYMQYGGEGSGGGGSTGGSYTTSGQGYGVNYPPHQLFQYSPIASTGGYAQHYATPMSLAPSPALQSGVTMALQAPIPHR* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1389 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Amo13g1389 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Amo13g1389 284 Gene3D - 7 112 IPR012677 -
Amo13g1389 284 SMART rrm1_1 17 89 IPR000504 GO:0003723
Amo13g1389 284 PANTHER BOULE-RELATED 1 279 IPR037366 GO:0003729
Amo13g1389 284 PANTHER OS01G0876800 PROTEIN 1 279 - -
Amo13g1389 284 CDD RRM_RBM24_RBM38_like 16 91 - -
Amo13g1389 284 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1389 Amo-Chr13 18450423 18457655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1389 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 5.75e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1389 - - adu:107477578 484.567