Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1380 ATGGGGATGAAGAAGAGTGAAAAAGACAGCAAAAAAGTGATGGAAAATAAGAAGAATGAGAAGAAAGATGTTGGCAGTGCTGCCAGCAATGCAACCATAGAAAATGACAGCGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGCCTTCGCCCTTCCTTATGCGATGAACTGCGTGAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTTGCATACAACGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCCGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAAATTGCGCTGGATAATTTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGACAAGATATACAGGAAATACTACATCTTTTGGGTTCAAGGAAAGCAGCAAATGATAACAAGGAGAGTACAGTTCCAAGAAACTCTGAATTTCAAAGGCAGAATTTGCTTTTTTCTGCCACCTTAAATGAGAAAGTGAACCATCTTGCTAAAATAAGTTTACACAATCCAGTGATGATTGGTCTTGAGGGTAAAACAAGAAAACCAGTATCAACAATTGAAAGCATTGATCCTTCAGAGTCTGATGAAGAAGACGAAGTCAAGTATTCCAGTAAAATACCAACAATTGTAGATTATAAAATCCCCACACAGTTAATTCAGAGATACGTGAGAGTGCCTTGTGGTTCTCGGCTTGCTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTTCACCATTCGCTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAGDTGTTTRTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCTAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACCAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCAGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACATAACAAACAAGTAAAGAAGTCTATTTTCATTGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTCGAGTCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTGGCCAAAAGCTTTGCGTTGAAACAACAACCATCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAAAAAAATGGGCTATCGAAAAAGAGAAAAGTTGCTAGAGTGACTTAG 1839 0.4029 MGMKKSEKDSKKVMENKKNEKKDVGSAASNATIENDSVFASCSFSSLGLRPSLCDELREKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTCIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTKLRWIIFDEADRILELGFGQDIQEILHLLGSRKAANDNKESTVPRNSEFQRQNLLFSATLNEKVNHLAKISLHNPVMIGLEGKTRKPVSTIESIDPSESDEEDEVKYSSKIPTIVDYKIPTQLIQRYVRVPCGSRLAVLLSILKHLFERDTSQKVVVFFSTCDAVDFHHSLLSEFHFSTDPQTKERVIQXFXGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLAEYPLLKVLDNFTLHGHNKQVKKSIFIDLHPWVLCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKNGLSKKRKVARVT* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1380 612 CDD DEADc_DDX31 53 271 - -
Amo13g1380 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 477 IPR027417 -
Amo13g1380 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 42 71 IPR014014 GO:0003724
Amo13g1380 612 CDD SF2_C_DEAD 315 465 - -
Amo13g1380 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 508 IPR001650 -
Amo13g1380 612 SMART ultradead3 62 286 IPR014001 -
Amo13g1380 612 SMART DUF4217_3 518 583 IPR025313 -
Amo13g1380 612 MobiDBLite consensus disorder prediction 1 24 - -
Amo13g1380 612 Pfam Domain of unknown function (DUF4217) 520 580 IPR025313 -
Amo13g1380 612 PANTHER RNA HELICASE 25 610 - -
Amo13g1380 612 Pfam Helicase conserved C-terminal domain 333 456 IPR001650 -
Amo13g1380 612 Pfam DEAD/DEAH box helicase 68 258 IPR011545 GO:0003676|GO:0005524
Amo13g1380 612 SMART helicmild6 374 456 IPR001650 -
Amo13g1380 612 Coils Coil 3 23 - -
Amo13g1380 612 MobiDBLite consensus disorder prediction 1 27 - -
Amo13g1380 612 Gene3D - 325 609 IPR027417 -
Amo13g1380 612 Gene3D - 3 273 IPR027417 -
Amo13g1380 612 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 25 610 - -
Amo13g1380 612 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 198 206 IPR000629 -
Amo13g1380 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 270 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1380 Amo-Chr13 18309060 18316228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1380 35 488 Eukaryotic Initiation Factors Gene Family AT3G19760 24.672 7.75e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1380 K14806 - gmx:100805157 938.332