Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1374 ATGGACACCTCATATGAAATGGAACCTTTTCTGTTCCAAAACGAATCTCCTCATCATGAAGTAGAAGAGGAGGATGAGTACTCCATTATTGCTGCAGCAGAGATCAAAGAATCACCACCCCCATCATCATCATCATCCCCACCACAAAGCAGCTGCTTCACTACTTTGACCGACTCCGATATCAGGAAGCTCCAAACCACTGAAATCAACAAGGTATCATCTGTTCTTCTCATACCACAATCCGATGCGTGCCTTTTGCTTATCCACCATGGCTGGAGCGCCATGAAGGTCCACGAAGCTTGGTTCGAAGACGAACAAAGAGTTCGAGAACTCGTTGGCTTGCTCAATAGTAGTAACAACATCAACCACTGGAAGGAACTAATCCAGAGTTCTACATGCGAGATCTGCTTTGATGATTCAGTTTGGTACAAGAAGGTGGAGTATGCCAAGTGTGGCCATGGATACTGCATCGATTGTTGGAAGCACTACATCGATGAGAAGATCCAAGAAGGTTCTCATGAGTGCCTGAAACCGATGCGATGCCCTCATCCATCTTGTGAGGCTTCCTTGGAGATTGAAACTGTTCGGCGATTCGCCAGCGAGACAAACAAGAACATGTACGATCGTTTCTTGTTACGCTCGTATGTCGAAACCAGAAAGAATATAAAGTGGTGTCCAAGTCCTGCTTGCGATCTTGCTGTTCTTTACGAATCGGATGGAAATTACGCTAACAAATATGTTGAAGCTTGTTGCAGTAATGAACATAGGTTTTGCTGGGAATGTGGTGAAGATGGTCATAGACCTGTGAGTTGTGAAACGGTGGCTGAGTGGATGAAGAAGAATGTGGATGATTCTCAGAGCGTGATTTGGATCTCTGCTTTCACGAAGGAATGCCCCGATTGTGGGATTCGCATTGAGAAGAATGAGGGTTGCATGCAGATGATTTGCACTGTTTGTGGCTGCCGATTTTGCTGGCTATGTCTTTCTAAGTGGTCTCTGTGTTCCGCTTACGGTTGTAACCGTTTCTCAGCCCGGAATATTGAGACGCCCACAATGAACAATGGAAATGGCTATTTGGACTTGGAGAGGTACACTCACTATTATGAACGTTGGTTTACCAACGAATTCTCAAGGAAAAAATCGATTGAGATGATGGAGAAGTACCTGAACAATGAGAATATAAGAATCCTGTGCAAGGAATTTGAAAGGCGTGAAGATGATTTTGAGTTTGTGAAGAAGGCTTGGGAAGAGGTAATCGAGTGTAGGAAGTTGCTGAAGTGGACCTATGCATATGGTTACTTCATCCCTGAGGAGGAGAAAGCCAAGAAGGAGTTGTTCGAACACACACAAGGCGTTGCTGAGAGTGCATTGGAGAAGCTTCACAAGTTTGCCGAAACAATGCTGATGGAGATCCTGAATAGGAAGAAAGACGGTTTCGATAGGAATCGTCTGGAACTTTCTCATCTGACCGTTGTCACCAAGAATTTCTTTGATAATATGGTGACACAATTGGAGGATAGAGGGCTTGACGATGTGAATGTGAAGAGTTATGGTGAAAGCTCAAGGTCCTCCTCATTGTCTTCTTGGCCTCGAGGTGTGGTGAGGGATGGGATGACAGAGATTGGTCTCCGGAAATGCGGTTATTGCGGTTATTACAACCTTGCCAGCACTCTAGAGTGTCCCTGCATTGAGAAGAAATACAAATACCAGTGCTGGATCTGTTCTCGTGATCCTCCCGTCATTTGGTGTCCATTGCGTATGGTTAATTAA 1770 0.4492 MDTSYEMEPFLFQNESPHHEVEEEDEYSIIAAAEIKESPPPSSSSSPPQSSCFTTLTDSDIRKLQTTEINKVSSVLLIPQSDACLLLIHHGWSAMKVHEAWFEDEQRVRELVGLLNSSNNINHWKELIQSSTCEICFDDSVWYKKVEYAKCGHGYCIDCWKHYIDEKIQEGSHECLKPMRCPHPSCEASLEIETVRRFASETNKNMYDRFLLRSYVETRKNIKWCPSPACDLAVLYESDGNYANKYVEACCSNEHRFCWECGEDGHRPVSCETVAEWMKKNVDDSQSVIWISAFTKECPDCGIRIEKNEGCMQMICTVCGCRFCWLCLSKWSLCSAYGCNRFSARNIETPTMNNGNGYLDLERYTHYYERWFTNEFSRKKSIEMMEKYLNNENIRILCKEFERREDDFEFVKKAWEEVIECRKLLKWTYAYGYFIPEEEKAKKELFEHTQGVAESALEKLHKFAETMLMEILNRKKDGFDRNRLELSHLTVVTKNFFDNMVTQLEDRGLDDVNVKSYGESSRSSSLSSWPRGVVRDGMTEIGLRKCGYCGYYNLASTLECPCIEKKYKYQCWICSRDPPVIWCPLRMVN* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1374 589 SUPERFAMILY RING/U-box 283 341 - -
Amo13g1374 589 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g1374 589 ProSiteProfiles TRIAD supradomain profile. 129 343 IPR044066 -
Amo13g1374 589 Gene3D - 267 510 - -
Amo13g1374 589 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED 41 517 - -
Amo13g1374 589 Pfam Ariadne domain 360 506 IPR045840 -
Amo13g1374 589 MobiDBLite consensus disorder prediction 34 54 - -
Amo13g1374 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 41 517 IPR031127 GO:0004842|GO:0016567
Amo13g1374 589 SUPERFAMILY RING/U-box 207 278 - -
Amo13g1374 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 219 IPR013083 -
Amo13g1374 589 ProSiteProfiles Zinc finger CCHC-type profile. 258 271 IPR001878 GO:0003676|GO:0008270
Amo13g1374 589 Pfam IBR domain, a half RING-finger domain 206 271 IPR002867 -
Amo13g1374 589 Pfam IBR domain, a half RING-finger domain 288 331 IPR002867 -
Amo13g1374 589 SMART ibrneu5 205 271 IPR002867 -
Amo13g1374 589 SMART ibrneu5 275 334 IPR002867 -
Amo13g1374 589 SUPERFAMILY RING/U-box 131 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1374 Amo-Chr13 18245831 18252181 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1374 53 560 ARIADNE family AT1G65430 39.205 2.52e-118 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1374 K11968 - mus:103995991 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1374 13 18245831 18252181 Amo13g1374 13 18245831 18252181 ECH