LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g1372	ATGAACAACAACCACACATATGAAACGGAAGATGAAGAAGACGAAGACGAAGAATCACTGGAAGACGAAGAAGATGATGAATCACTGGAAGACGAAAAAGACGATGAATCACTGGAAGATGAAGAAGAAGAATCTCTAGAAGAAGAACCTCTGGAAGGGAAAGAAGATGAAGAATCACTGGAAGACGAAGAAGATGATGAATCACTGGAAGACGAAGAAGAAGAATCTCTGGAAGACGAAAAAGACGATGAATCACTGGAAGATGAGAGAAGAAGAAGAACCTCTCGAAGAGGAAGAAGACGGAATCACTGGAGAGAAGAAGAAGAAGAATCTCTGAAAGACGAAGAAGACGATGAATCACTGGAAGATGAAAAAGACGAGAATCTCGAAGAAGAAGAACCTCTCGAAGACGAAGAAGACGATGAATCACTGGAAGGCGAAGAAGACCATGAATCACTGGAAGACGAAGAAGAAGAATCTCTAGAAGAATGCACCACATCACGAAAGAGAAGCCGCTTCACTACTTTGACCAAGTCAAACATCAAGAAGCTCCGAAAAACTAAAATCAATGAGGTATCATCTAATCTTTCGATCACAAAATCCGAGGCGTGCCTATTGCTAATCCACCATGGTTGGAGCGCCACGAAGGTCGACGAGGCCTGGTTGGACGACGAAGAAAGAGTTCGGAAACTTGTTGGATTGCTCAAACACAACTCCGGAGAGATCATAACAACCCAAACTTGTGAGATATGTTTTGATAATACGGTTTGGTTGGAGAAGAAGTTGAAATCCGCCAAGTGCGGCCACGCATACTGCGTCGATTGTTGGAAGCGCTACATCAATGAGAAGATCAAAGAAGGTCGTCATGAGTGCCTCAAACCCATGAGATGCCCTCATCCATCTTGTGAGGCTTCTTTGGAGATTAACATGATTCGCCGATTCGCTAGCCAGCAAAACAGGAAGATGTACGATCGTTTCTTGTTACGATCTTATGTCGAAACAAGAAAGAATATAAAATGGTGTCCAAGGGCTGATTGCGATCTTGCTGTTCGTTACAAATCAGATGGAAATTATGTTAACAAATATGTTGAAGTAAGTTGCAGGAATGGGCATAAGTTTTGCTGGGGATGCGGCGAAGATGCTCATAGACCCGTGAGTTGTGAAATGATGGCTAAGAAGAACCAAGAAAGTGGTGATTCTAAGAGCTTGCGTTGGATCTCTACTTTCACCAAGAAATGCCCTAGTTGTAAGCAACCCATTGAGAGGAACGGGGGTTGCATGCACGTAACATGCACTGTTTGCAGCTACCAATTTTGCTGGCTATGTCTTTCTGATTGGTTTCTGTGTTCCGCCCGTTGCAACCGTTTCTAG	1371	0.4347	MNNNHTYETEDEEDEDEESLEDEEDDESLEDEKDDESLEDEEEESLEEEPLEGKEDEESLEDEEDDESLEDEEEESLEDEKDDESLEDERRRRTSRRGRRRNHWREEEEESLKDEEDDESLEDEKDENLEEEEPLEDEEDDESLEGEEDHESLEDEEEESLEECTTSRKRSRFTTLTKSNIKKLRKTKINEVSSNLSITKSEACLLLIHHGWSATKVDEAWLDDEERVRKLVGLLKHNSGEIITTQTCEICFDNTVWLEKKLKSAKCGHAYCVDCWKRYINEKIKEGRHECLKPMRCPHPSCEASLEINMIRRFASQQNRKMYDRFLLRSYVETRKNIKWCPRADCDLAVRYKSDGNYVNKYVEVSCRNGHKFCWGCGEDAHRPVSCEMMAKKNQESGDSKSLRWISTFTKKCPSCKQPIERNGGCMHVTCTVCSYQFCWLCLSDWFLCSARCNRF*	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g1372	456	Pfam	IBR domain, a half RING-finger domain	322	387	IPR002867	-
	Amo13g1372	456	Pfam	IBR domain, a half RING-finger domain	402	446	IPR002867	-
	Amo13g1372	456	SUPERFAMILY	RING/U-box	323	393	-	-
	Amo13g1372	456	Coils	Coil	29	49	-	-
	Amo13g1372	456	Gene3D	-	383	456	-	-
	Amo13g1372	456	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	243	336	IPR013083	-
	Amo13g1372	456	SUPERFAMILY	RING/U-box	245	334	-	-
	Amo13g1372	456	SMART	ibrneu5	321	387	IPR002867	-
	Amo13g1372	456	SMART	ibrneu5	395	449	IPR002867	-
	Amo13g1372	456	ProSiteProfiles	Zinc finger RING-type profile.	248	298	IPR001841	-
	Amo13g1372	456	ProSiteProfiles	TRIAD supradomain profile.	244	456	IPR044066	-
	Amo13g1372	456	MobiDBLite	consensus disorder prediction	1	169	-	-
	Amo13g1372	456	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	146	456	IPR031127	GO:0004842\|GO:0016567
	Amo13g1372	456	MobiDBLite	consensus disorder prediction	8	84	-	-
	Amo13g1372	456	MobiDBLite	consensus disorder prediction	110	161	-	-
	Amo13g1372	456	SUPERFAMILY	RING/U-box	405	449	-	-
	Amo13g1372	456	Coils	Coil	60	89	-	-
	Amo13g1372	456	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED	146	456	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g1372	Amo-Chr13	18231410	18232780	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g1372	171	446	ARIADNE family	AT1G05890	41.696	1.66e-73	240

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g1372	K11968		-	gmx:100801350	291.967