Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1362 GGGGGTTTGTTTTGTATAAGTAAATATGTGCTTGTATGTAGAATTTGTGAAAATACAAAAATGGCTAACCCTAAGGTTTACTTCGACATGTCCATCGGAGGACAACCGGCAGGAAGAGTCGTCTTCGAGCTCTTCGCCGACACGGTTCCCCGCACCGCCGAGAATTTCCGCGCCCTCTGCACCGGTGAGAAAGGCGTCGGTCGCAGCGGCAAGCCTCTCCACTACAAGGGATCATCCTTCCACCGTGTGATCCCTAACTTCATGTGTCAGGGAGGTGACTTCACCGCCGGAAATGGCACCGGAGGTGAGTCGATCTACGGCTCCAAGTTTGCCGATGAGAACTTTATCAAGAAGCACACCGGTCCTGGGATCCTTTCAATGGCGAATGCAGGACCTGGAACGAACGGATCTCAGTTCTTCATCTGCACCTCAAAGACGGAGTGGCTCGACGGAAAGCACGTGGTGTTCGGCCAAGTTGTTGAAGGATTGGACGTCGTTAAGGCGGTCGAGAAGGTCGGATCTAGCTCCGGCAAGACCTCCAAGCCTGTTGTGATCGCCGATTGCGGTCAACTCTCTTAG 579 0.532 GGLFCISKYVLVCRICENTKMANPKVYFDMSIGGQPAGRVVFELFADTVPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFFICTSKTEWLDGKHVVFGQVVEGLDVVKAVEKVGSSSGKTSKPVVIADCGQLS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1362 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 59 IPR002130 GO:0000413|GO:0003755
Amo13g1362 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 138 IPR002130 GO:0000413|GO:0003755
Amo13g1362 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 151 166 IPR002130 GO:0000413|GO:0003755
Amo13g1362 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 80 92 IPR002130 GO:0000413|GO:0003755
Amo13g1362 192 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 150 IPR002130 GO:0000413|GO:0003755
Amo13g1362 192 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 21 192 - -
Amo13g1362 192 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 21 192 - -
Amo13g1362 192 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 75 92 IPR020892 GO:0003755|GO:0006457
Amo13g1362 192 SUPERFAMILY Cyclophilin-like 16 191 IPR029000 -
Amo13g1362 192 CDD cyclophilin_ABH_like 24 189 - -
Amo13g1362 192 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 27 190 IPR002130 GO:0000413|GO:0003755
Amo13g1362 192 PIRSF Peptidylpro_ismrse 14 192 IPR024936 GO:0003755
Amo13g1362 192 Gene3D - 14 192 IPR029000 -
Amo13g1362 192 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 27 189 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1362 Amo-Chr13 18145701 18147752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1362 38 172 U-box Gene Family AT5G67530 50.000 3.39e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1362 K01802 - pvy:116118183 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1362 13 18145701 18147752 Amo13g1362 13 18145701 18147752 ECH