Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1347 ATGGACCTTCAAACCTTGGAGAATTTGAAAAAATCTTCATCAAAGAACAAAGATCAAGATGATGATCAAGAAGTGAAAGAGAATACTACTAGTAGTGTTCTTCAACTTGATCTAAGTCTTTCAAGCAATGATGAATCAAGAACAAAGCAAGAGCTGAACCTTCTCAACTTCCTTGATCCAAATTCATCAGAAAACTCATCAGAAGAAGAAGAAGAAGGTAACAAGAACAAGAATCATGAAATGGAGCACAGAACATTCTCATGCAACTATTGCCAGAGAAAGTTCTACAGTTCTCAAGCACTTGGTGGGCATCAAAATGCACACAAAAGAGAAAGAACATTAGCAAGAAGAGGACACCATCACAAATCTCCATCATCATCATCATCATCAATGGTAGATTTTGGATACAGATTCTCTCCTTCTTCTTCTTCTTCAAATGGATCCTATAACAAGCCACTTGGGATCCAGCTTCATTCTATGATCAATAAACCTTCTTCTCAGCCACCCTTTTTCGCGACCTGTCGCGAAAACGGGTGGCAGAGACAGAAGCATTACTTGGATTCACACCCTGCAAATCGGAAGCTGAATAGTAATAATGGTTTGGGATCTGAACCACCATCATCCATGGCTGTTTTCGGCGGCGGCGGCGGCGTGCCGAGGTTAGGGAAGTTTCCTCCTACAAGGCTTGTGACACAAGGTTTTGGAGGATATTGGTTTGGTAGTGTTTCTCATTTGAATTCTAAACATGAAAATAAGTTGCAGAAGCTTGATTTGTCACTCAAGCTCTAA 789 0.4056 MDLQTLENLKKSSSKNKDQDDDQEVKENTTSSVLQLDLSLSSNDESRTKQELNLLNFLDPNSSENSSEEEEEGNKNKNHEMEHRTFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGHHHKSPSSSSSSMVDFGYRFSPSSSSSNGSYNKPLGIQLHSMINKPSSQPPFFATCRENGWQRQKHYLDSHPANRKLNSNNGLGSEPPSSMAVFGGGGGVPRLGKFPPTRLVTQGFGGYWFGSVSHLNSKHENKLQKLDLSLKL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1347 262 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 262 - -
Amo13g1347 262 Gene3D Classic Zinc Finger 62 142 - -
Amo13g1347 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 262 IPR044246 GO:0009788
Amo13g1347 262 MobiDBLite consensus disorder prediction 100 132 - -
Amo13g1347 262 MobiDBLite consensus disorder prediction 1 80 - -
Amo13g1347 262 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Amo13g1347 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Amo13g1347 262 SUPERFAMILY beta-beta-alpha zinc fingers 83 114 IPR036236 -
Amo13g1347 262 MobiDBLite consensus disorder prediction 11 27 - -
Amo13g1347 262 MobiDBLite consensus disorder prediction 28 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1347 Amo-Chr13 17950597 17951437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1347 19 262 C2H2 Transcription Factor Family AT5G10970 37.255 1.04e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g1347 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1347 - - adu:107463735 431.024