Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1345 ATGCTGATGTTCGCCGGAACAGCGGCGGCAATAACGAACAAGAAGACCAATGGATTGAAAAGTCTATTGGGCTGCGCTGTCGTCACCGGCCTTTGGGTGACGGTGATCATCCTGTGCACCGGACACATATCCGGTGCTCATCTGAACCCCGCTGTCACCATAGCATTTGCTGCCTTAAAGCACTTCCCTTGGAAGAAGGTGCCAATGTATATTGGAGCACAGATATTGGCATCAGTGTGTGTGCCGCATTTGCACTGA 258 0.5155 MLMFAGTAAAITNKKTNGLKSLLGCAVVTGLWVTVIILCTGHISGAHLNPAVTIAFAALKHFPWKKVPMYIGAQILASVCVPHLH* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1345 85 PRINTS Major intrinsic protein family signature 29 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g1345 85 PRINTS Major intrinsic protein family signature 66 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g1345 85 Pfam Major intrinsic protein 2 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g1345 85 PANTHER AQUAPORIN NIP2-1 1 81 IPR034294 -
Amo13g1345 85 PANTHER BNAA02G36290D PROTEIN 1 81 - -
Amo13g1345 85 ProSitePatterns MIP family signature. 47 55 IPR022357 -
Amo13g1345 85 SUPERFAMILY Aquaporin-like 1 80 IPR023271 -
Amo13g1345 85 Gene3D Glycerol uptake facilitator protein. 1 81 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1345 Amo-Chr13 17878211 17878531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1345 1 80 Major Intrinsic Protein MIP AT1G80760 71.250 5.97e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1345 K09874 - gmx:100815637 134.806