Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1323 ATGGAAGCTGTTTTATTCGCCGCTAATCCAGCTTCTCACCTCAAACTTCTTCCCACTCTCAAACAACCCTTCTCTTCCACCAACCACCTCCCCTTCCGCCACAAAACCAACCACGTCCACCTCCCTCCTCTCTCCGCACTCCAAAACCAGAGCCAGCCAACTCCCACCGAAGATGAATCCTACGGCGAGGTCAAGAAAATCATCGGAAGCAGAGCCCTCGAAGGTGCCACTGGAATGGAGTACCTCATAGAGTGGAAAGACGGTCATGCCCCTTCYTGGGTCCCCTCTGACTTCATAGCCAAAGACGTCCTCTCCGAATACGAGTCTCCCTGGTGGACCGCAGCTAAGAAAGCCGACCACGACGCACTCCGTCAARTCCTCGACTCCGATGATGGTCGGGACGTCAACGCCGTCGACTCAGACGGCCGCACTGCCCTCCTCTTCGTCGCTGGACTGGGTTCTGAGCCCTGCGTCCGCCTCCTCGCGGAGTCCGGCGCCGATGTCGACCACCGCGACAACGCCGGCGGCCTCACCGCTCTCCACATGGCGGCGGGYTACGTGAGGCCCGGCGTCGCGAAGCTTCTCCTGGACCTCGGCGCGGTTTTCGAGTTCGCGGAGGTGGAGGAGATTATTGAGCGGAGGGGGAAGGGTGAGAATTTGGAGTACCTTGTGCGGTGGAAGGATGGTGGCGCCAACGAGTGGGTGAAGGCGAGGTTTGTGGCGGAGGATCTGGTTAGGGATTACGAAGCTGGCCTTGAGTACGCGGTGGCGGAGGCTGTGCTTGGGAAAAGGGTCGGCGATGAAGGGAGACCAGAGTTTTTAGTTAAGTGGGCTGATATGGATGAGCCCACTTGGGAGCCTGAGGAGAATGTGGATCCTGAACTCGTTAAGGAGTTTGAGTTAAGTAGTAATGGTCAGGCCCAAATTAGTAATGGGCCTATTCCGAGTAATGGGCCTGAAGTGGTGTTTTCGAATCAGGACAGCCTGTGA 990 0.5727 MEAVLFAANPASHLKLLPTLKQPFSSTNHLPFRHKTNHVHLPPLSALQNQSQPTPTEDESYGEVKKIIGSRALEGATGMEYLIEWKDGHAPSWVPSDFIAKDVLSEYESPWWTAAKKADHDALRQXLDSDDGRDVNAVDSDGRTALLFVAGLGSEPCVRLLAESGADVDHRDNAGGLTALHMAAGYVRPGVAKLLLDLGAVFEFAEVEEIIERRGKGENLEYLVRWKDGGANEWVKARFVAEDLVRDYEAGLEYAVAEAVLGKRVGDEGRPEFLVKWADMDEPTWEPEENVDPELVKEFELSSNGQAQISNGPIPSNGPEVVFSNQDSL* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1323 329 Gene3D - 60 114 - -
Amo13g1323 329 CDD CD3_cpSRP43_like 252 301 - -
Amo13g1323 329 SUPERFAMILY Chromo domain-like 57 111 IPR016197 -
Amo13g1323 329 SMART chromo_7 254 304 IPR000953 -
Amo13g1323 329 SMART chromo_7 203 253 IPR000953 -
Amo13g1323 329 SMART chromo_7 60 112 IPR000953 -
Amo13g1323 329 ProSiteProfiles Ankyrin repeat region circular profile. 141 173 - -
Amo13g1323 329 Pfam Ankyrin repeats (3 copies) 114 200 IPR002110 GO:0005515
Amo13g1323 329 ProSiteProfiles Chromo and chromo shadow domain profile. 255 300 IPR000953 -
Amo13g1323 329 MobiDBLite consensus disorder prediction 302 329 - -
Amo13g1323 329 Gene3D - 199 250 - -
Amo13g1323 329 ProSiteProfiles Ankyrin repeat region circular profile. 175 200 - -
Amo13g1323 329 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 5 200 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Amo13g1323 329 PANTHER HOMEOBOX PROTEIN WARIAI 201 307 - -
Amo13g1323 329 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 201 307 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Amo13g1323 329 MobiDBLite consensus disorder prediction 28 61 - -
Amo13g1323 329 Gene3D - 251 301 - -
Amo13g1323 329 PANTHER HOMEOBOX PROTEIN WARIAI 5 200 - -
Amo13g1323 329 SMART ANK_2a 106 137 IPR002110 GO:0005515
Amo13g1323 329 SMART ANK_2a 175 204 IPR002110 GO:0005515
Amo13g1323 329 SMART ANK_2a 141 170 IPR002110 GO:0005515
Amo13g1323 329 MobiDBLite consensus disorder prediction 42 58 - -
Amo13g1323 329 ProSiteProfiles Ankyrin repeat profile. 175 207 IPR002110 GO:0005515
Amo13g1323 329 SUPERFAMILY Chromo domain-like 203 250 IPR016197 -
Amo13g1323 329 Gene3D - 115 198 IPR036770 -
Amo13g1323 329 Pfam Chromo (CHRromatin Organisation MOdifier) domain 257 300 IPR023780 -
Amo13g1323 329 SUPERFAMILY Chromo domain-like 253 300 IPR016197 -
Amo13g1323 329 ProSiteProfiles Ankyrin repeat profile. 141 173 IPR002110 GO:0005515
Amo13g1323 329 SUPERFAMILY Ankyrin repeat 107 200 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1323 114 207 Ion Channels AT2G25600 40.426 1.24e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1323 K12271 - gmx:100818382 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1323 13 17647698 17648828 Amo13g1323 13 17647698 17648828 ECH