Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1307 ATGCTTCAAAGCTTGGTCCCTCGTTCGCCTATTACTCCAAACCCTAACTCCATGAAGACCAAGCGTGACCGCCACGACGCCACCGCTGATTCCCCCGCTGACGAGGAGCCTTCCTTCAAGCGCGCTAACTTCTCCGGTGAGAAGTCATCGGCGCAGGCCGTGGGAGAAGCTGAGGGACACCACGAAGAACAGCAGCAACAGGTTCTGGAAGTGGCGGAGGCCAGAGGAGGAGAATCAACCGGCCTTAAGCTCCTCGGTTTGCTGCTCCAATGCGCGGAGTGCGTCGCCATGGACAACCTTGACTTCGCGAACGACCTCCTCCCGGAGATCGCGGAGCTCTCGTCGCCGTTCGGAACCTCGCCGGAGCGCGTCGGCGCGTACTTCGCACAGGCTCTGCAGGCTCGCGTGGTGAGCTCATGCCTCGGAGCGTACTCACCTCTCACCGCGAAATCGGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCGTTCCAGTCCTACAACTCGGTGTCGCCGCTCGTCAAGTTCTCTCACTTCACCGCAAACCAAGCGATCTTCCAAGCTCTCGACGGCGAGGATCGCGTCCACATCATCGACCTCGACATCATGCAAGGTCTTCAATGGCCAGGACTCTTCCACATCCTTGCCTCGCGATCCAGGAAGATCCGCTCCATGCGGATCACCGGATTTGGATCCTCGTCGGAGCTTCTAGAATCCACCGGAAGACGCCTCGCCGATTTCGCTAGCTCGCTCGGTTTACCGTTCGAGTTTCATCCGGTGGAAGGAAAAATCGGAAGCATCACGGACCTGAGTCAACTCGGCGTTCGACCAAATGAAGCGATCGTAGTTCACTGGATGCACCATTGCTTATACGACATAACAGGGAGCGATTTAGGGACGTTGAGATTGCTGAGTCAGCTGAGGCCGAAGCTGATCACGACGGTGGAGCAGGATCTGAGCCACGCCGGGAGCTTCCTCGCGAGGTTCGTGGAGGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTGGGAGACGGTTTGGGTGCGGACAGTTTGGAGAGGCACACGGTAGAGCAGCAGCTTCTAGGGTGCGAGATCAGGAACATCGTGGCCGTTGGAGGTCCCAAGAGGACCGGCGAGGTTAAAGTGGAGCGCTGGGGAGAGGAGTTGAGACGGGTCGGATTTCGACCCGTTTCTCTTCGGGGAAACCCGGCCTCGCAGGCTAGTTTGCTCCTTGGGATGTTCCCTTGGAGAGGGTATACCCTCGTTGAGGAAAACGGTTCTCTCAAGCTTGGTTGGAAGGATCTTTCTTTGTTGACCGCTTCTGCTTGGCAACCGTCCGATTTGATTACTTATCCTGAATGA 1365 0.5722 MLQSLVPRSPITPNPNSMKTKRDRHDATADSPADEEPSFKRANFSGEKSSAQAVGEAEGHHEEQQQQVLEVAEARGGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGAYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSITDLSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGEELRRVGFRPVSLRGNPASQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLTASAWQPSDLITYPE* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1307 454 ProSiteProfiles GRAS family profile. 75 445 IPR005202 -
Amo13g1307 454 MobiDBLite consensus disorder prediction 18 42 - -
Amo13g1307 454 MobiDBLite consensus disorder prediction 1 17 - -
Amo13g1307 454 Pfam GRAS domain family 86 445 IPR005202 -
Amo13g1307 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 58 446 IPR005202 -
Amo13g1307 454 MobiDBLite consensus disorder prediction 1 66 - -
Amo13g1307 454 PANTHER SCARECROW-LIKE PROTEIN 23 58 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1307 Amo-Chr13 17077293 17079864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1307 79 448 GRAS Transcription Factor Family AT5G41920 73.067 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo13g1307 GRAS 3.4e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1307 - - gmx:100816249 763.837