Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1298 ATGGCTTTCTTTGTTCGCTTCTCTCTGTTGTTGCTTCTTCTTTCTTCATCTGCCACCGCTTGTGATCGTTGCGTCCACCAATCCAAGGCTTCTTTTTTCTCCAAAGCCTCCGCTCTGTCATCTGGGGCGTGTGGTTATGGTGAATTGGCACTGTCGTTAAGTGCTGGAAACCTTGCAGCTGCTGTTCCTTCCATCTTCAGAGATGGTGCTGCTTGTGGTGCGTGCTTCCAGATTAGATGCAAGGACCCAAAGCTCTGCACAAAATCAGGAACCAGAGTGGTTCTTACTGATCTTAACAAAGATAACAAAACTGATTTTGTTCTTAGCACCAGAGCCTTTCAATCTTTGGCTCTCAAAGGAAAATCTCAGTATCTTCTCAACCTTGGCATTCTTGACATTGAATACAAAAGGGTACCTTGTGAGTACAAAAACAAGAACCTGGCTGTTCGCGTTGAAGAATCAAGCAGGAAGCCAAATTACTTGGCTATTAAATTTTTGTATCAAGGTGGTCAAACTGACATTGTAGCCGTTGATGTAGCTAAGGTTGGGTCGTCAAACTGGAGTTTCTTAAGCAGAAATCATGGGGCGGTGTGGGACACAAGCAGGGTTCCAGAAGGGGCATTGCAGTTAAGGTTGGTTGTAACGGCAGGTTTTGATGGGAAGTGGATTTGGGCACAGAAGGAGGTTCTTCCGGCTGATTGGAAAAATGGTGTCATCTATGATTCTGGTGTTCAAATCACTGACATTGCTCAAGAAGGTTGTGCCACTTGCGATGATGGTTCTTGGCCATGA 792 0.452 MAFFVRFSLLLLLLSSSATACDRCVHQSKASFFSKASALSSGACGYGELALSLSAGNLAAAVPSIFRDGAACGACFQIRCKDPKLCTKSGTRVVLTDLNKDNKTDFVLSTRAFQSLALKGKSQYLLNLGILDIEYKRVPCEYKNKNLAVRVEESSRKPNYLAIKFLYQGGQTDIVAVDVAKVGSSNWSFLSRNHGAVWDTSRVPEGALQLRLVVTAGFDGKWIWAQKEVLPADWKNGVIYDSGVQITDIAQEGCATCDDGSWP* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1298 263 PANTHER EXPANSIN-LIKE A1-RELATED 9 259 - -
Amo13g1298 263 Pfam Lytic transglycolase 60 135 IPR009009 -
Amo13g1298 263 SUPERFAMILY PHL pollen allergen 145 242 IPR036749 -
Amo13g1298 263 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Amo13g1298 263 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Amo13g1298 263 PRINTS Major pollen allergen Lol pI signature 218 235 IPR005795 GO:0005576|GO:0019953
Amo13g1298 263 PRINTS Major pollen allergen Lol pI signature 80 90 IPR005795 GO:0005576|GO:0019953
Amo13g1298 263 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Amo13g1298 263 Pfam Expansin C-terminal domain 148 231 IPR007117 -
Amo13g1298 263 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Amo13g1298 263 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Amo13g1298 263 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Amo13g1298 263 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Amo13g1298 263 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Amo13g1298 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 145 IPR007112 -
Amo13g1298 263 Gene3D - 14 141 IPR036908 -
Amo13g1298 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 242 IPR007117 -
Amo13g1298 263 SUPERFAMILY Barwin-like endoglucanases 10 144 IPR036908 -
Amo13g1298 263 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Amo13g1298 263 Gene3D - 142 247 IPR036749 -
Amo13g1298 263 PANTHER EXPANSIN-B3 9 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1298 Amo-Chr13 16916740 16918471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1298 1 257 Expansin Gene Family AT3G45960 62.934 3.63e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1298 - - adu:107477263 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1298 13 16916740 16918471 Amo13g1298 13 16916740 16918471 ECH