Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1296 ATGCTTCAAAGCTTGGTCCCTCGTTCGCCTATTACTCCAAACCCTAACTCCATGAAGACCAAGCGTGACCGCCACGACGCCACCGCTGATTCCCCCGCTGACGAGGAGCCTTCCTTCAAGCGCGCTAACTTCTCCGGTGAGAAGTCATCGGCGCAGGCCGTGGGAGAAGCTGAGGGACACCACGAAGAACAGCAGCAACAGGTTCTGGAAGTGGCGGAGGCCAGAGGAGGAGAATCAACCGGCCTTAAGCTCCTCGGTTTGCTGCTCCAATGCGCGGAGTGCGTCGCCATGGACAACCTTGACTTCGCGAACGACCTCCTCCCGGAGATCGCGGAGCTCTCGTCGCCGTTCGGAACCTCGCCGGAGCGCGTCGGCGCGTACTTCGCACAGGCTCTGCAGGCTCGCGTGGTGAGCTCATGCCTCGGAGCGTACTCACCTCTCACCGCGAAATCGGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCGTTCCAGTCCTACAACTCGGTGTCGCCGCTCGTCAAGTTCTCTCACTTCACCGCAAACCAAGCGATCTTCCAAGCTCTCGACGGCGAGGATCGCGTCCACATCATCGACCTCGACATCATGCAAGGTCTTCAATGGCCAGGACTCTTCCACATCCTTGCCTCGCGATCCAGGAAGATCCGCTCCATGCGGATCACCGGATTTGGTTCCTCGTCGGAGCTTCTAGAATCCACCGGAAGACGCCTCGCCGATTTCGCTAGCTCGCTCGGTTTACCGTTCGAGTTTCATCCGGTGGAAGGAAAAATCGGAAGCATCACGGACCTGAGTCAACTCGGCGTTCGACCAAATGAAGCGATCGTAGTTCACTGGATGCACCATTGCTTATACGACATAACAGGGAGCGATTTAGGGACGTTGAGATTGCTGAGTCAGCTGAGGCCGAAGCTGATCACGACGGTGGAGCAGGATCTGAGCCACGCCGGGAGCTTCCTCGCGAGGTTCGTGGAGGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTGGGAGACGGTTTGGGTGCGGACAGTTTGGAGAGGCACACGGTAGAGCAGCAGCTTCTAGGGTGCGAGATCAGGAACATCGTGGCCGTTGGAGGTCCCAAGAGGACCGGCGAGGTTAAAGTGGAGCGCTGGGGAGAGGAGTTGAGACGGGTCGGTTTTCGACCCGTTTCGCTTCGGGGAAACCCGGCCTCGCAGGCTAGTTTGCTCCTTGGGATGTTCCCTTGGAGAGGGTATACCCTCGTTGAGGAAAACGGTTCTCTCAAGCTTGGTTGGAAGGATCTTTCTTTGTTGACCGCTTCTGCTTGGCAACCGTCCGATTTGGTTACTTATCCTGATTGA 1365 0.5736 MLQSLVPRSPITPNPNSMKTKRDRHDATADSPADEEPSFKRANFSGEKSSAQAVGEAEGHHEEQQQQVLEVAEARGGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGAYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSITDLSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGEELRRVGFRPVSLRGNPASQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLTASAWQPSDLVTYPD* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1296 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 58 446 IPR005202 -
Amo13g1296 454 PANTHER SCARECROW-LIKE PROTEIN 23 58 446 - -
Amo13g1296 454 ProSiteProfiles GRAS family profile. 75 445 IPR005202 -
Amo13g1296 454 MobiDBLite consensus disorder prediction 18 42 - -
Amo13g1296 454 MobiDBLite consensus disorder prediction 1 17 - -
Amo13g1296 454 Pfam GRAS domain family 86 445 IPR005202 -
Amo13g1296 454 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1296 Amo-Chr13 16882230 16884886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1296 79 448 GRAS Transcription Factor Family AT5G41920 73.067 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo13g1296 GRAS 3.4e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1296 - - gmx:100816249 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1296 13 16882230 16884886 Amo13g1296 13 16882230 16884886 ECH