Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1289 ATGCAAGAAGAAGGTTCATCTTCTGTAACTTCCTCACCCCTGCAATCCGTTTCAACCATGTCACTTTCACCTAGCTTGGGATCTCCACACCCCATGCCTAAGGAACTGAGATCTGAGGAAAGGGGTTTGTGCTTAATCCATTTGCTTCTCACTTGTGGAAATCATGTAGCTGCTGGTAATATTGAAACTGCAAATGTTTTACTTGGGCAAAGTTCCATGCTTGCCTCTCCAGAGGGCGATACTATGCAGCGGATCGCGGCCTATTTTACCGAAGCACTTGCTGATCGGATACTTAAGGCATGGCCCGGGCTCCATAGAGCCCTCAACTCTACTAGAATGGTCATGGTTTCTGAAGAAGTTCTCACTCGAAAGCTTTTTTATGAAATTTTTCCTTTTATGAAGATAGCATTTGTTCTGACAAATCAAGCTATCATTGAGGCGATGAAAGGCGAAAAAATGATTCATATAATTGATCTTAATGCTATTGAATCTGCTCAGTGGCTTGCACTCCTCCAAATTCTGAGTAAACGTCCCGAAGGTCCACCTCATTTGAGAATCACTGGTGTTCATCAAAAGAAAGAGATTCTAGACCAAATAGCTTATAGACTGGTTGAAGAAGCAGAGAAGTTGGATATTCCATTCCAGTTTAACCCTGTAGTCAGCAAATTAGAGAGCTTAGATTTTGAAAAATTTCGCGTGAAAAGTGGGGAGGCACTCGCTATAACTTCCATGCTCCAATTGCATTCACTTTTGGCATGGGACAACGAAGCTGCACAGAGAAGAAATCCTCAATTAGCTAGAACCTCAAATGCAATTCACCGGAAAAGAAAACAGCCTATGTTCCAAAGCTCATCCAGTGATTTGCCTGAGAATACGCCTAGTCCTGACTCATCCTCATCGTCTCCAGCATCGTTAACTACTTCAAATTCAAAGCATACGGAGAGCTTTCTTAATGCATTATGCGGATTATCACCAAAGGTTATGGTTGTAACCGAACAGGACTCCAATCACAATGGTTTGACTCTTATGGACAGGCTACTAGAAGCTCTATACTCTTATGCTGCACTATTTGATTGCTTGGAGTGCACTCTGCCAAGGACATCATTGGAGAGATTAAGGCTTGAGAAGATGCTTTTCGGTGAGGAAATCAAGAACATTGTCGCGTGCGAGGGATTGGAACGAAGGGAAAGGCACGAGAGGCTGGATAAGTGGATCCACAGATTTTATTTGGCTGGATTTGTTAACATGCCCTTAAGCTATTTTGGTACGCTGCAAGCAAAGAGGTTCTTGCAGAGCTATAGTTGTGACGGTTATAGAATGAGAGAGGAAAATGGTTGTGTATTAATTGGTTGGCAAGATAGGCCCTTGTTTTCAGTATCAGCTTGGAGATCTAGGAAGTAA 1401 0.4268 MQEEGSSSVTSSPLQSVSTMSLSPSLGSPHPMPKELRSEERGLCLIHLLLTCGNHVAAGNIETANVLLGQSSMLASPEGDTMQRIAAYFTEALADRILKAWPGLHRALNSTRMVMVSEEVLTRKLFYEIFPFMKIAFVLTNQAIIEAMKGEKMIHIIDLNAIESAQWLALLQILSKRPEGPPHLRITGVHQKKEILDQIAYRLVEEAEKLDIPFQFNPVVSKLESLDFEKFRVKSGEALAITSMLQLHSLLAWDNEAAQRRNPQLARTSNAIHRKRKQPMFQSSSSDLPENTPSPDSSSSSPASLTTSNSKHTESFLNALCGLSPKVMVVTEQDSNHNGLTLMDRLLEALYSYAALFDCLECTLPRTSLERLRLEKMLFGEEIKNIVACEGLERRERHERLDKWIHRFYLAGFVNMPLSYFGTLQAKRFLQSYSCDGYRMREENGCVLIGWQDRPLFSVSAWRSRK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1289 466 PANTHER SCARECROW-LIKE PROTEIN 3 2 465 IPR030008 GO:0003700|GO:0005634|GO:0009739
Amo13g1289 466 ProSiteProfiles GRAS family profile. 36 463 IPR005202 -
Amo13g1289 466 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 465 IPR005202 -
Amo13g1289 466 Pfam GRAS domain family 45 463 IPR005202 -
Amo13g1289 466 MobiDBLite consensus disorder prediction 1 26 - -
Amo13g1289 466 MobiDBLite consensus disorder prediction 262 309 - -
Amo13g1289 466 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1289 Amo-Chr13 16780633 16782887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1289 2 466 GRAS Transcription Factor Family AT1G50420 61.216 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo13g1289 GRAS 6.5e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1289 - - gmx:100814131 689.493