Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1288 ATGATGGAGTTTGTGGGCAAAATCGTGAAGAAAGAGGTCAAAGGTGTTGGGTTTGTCACCGGAACCGTCAAATCCTACGACCCTTCTTCAAGTTTCGTCGAGATCCTCTACGACAACGGCGATTCTGAGGAGCTGGAATCAAACGAAGTGGTTTTGCTTCTTCAACAAGCTCAGCCGGAGCTCGCTAAGCCAAAGACTCGGGTTGGCCGGAAGCCCAAGAAGCGCCGCCGTGTTGAGAAGAAGGCCGGAGCTGGAGACAGTTCAGGTAATGCCAATGGAAATTTGGTTTTGGAAGTTAGTGAAATTAGGGATAATTCGGAAGTGAATGGTGAATTAGGTCTTGGAATTGAGGAAAAGCTAGGAAATGGGAATGCTAATGCGAATGGGAGTGTGGAGTCAATTGTGAGTGATGGAACTCTTGGGAGGGAAATTGGGGTTGAGGGGGATTTAAATTTGAATAAGGATGTAGCCGTAAATGGAAGTTGTCTTAGGGATGAGCTTGATTTGAATTCTGGGATTAATCTCAATGAGGATTTGAATCTTAATGATGGGTGTGGTTTATTGACTTTTGATGGCACTGAGGTTGGTTTAAAGAGAAGAGATTGTATTGACTTGAATTTGGATGTCAATAATGACGATGATGTCAGCATGAATGGGGGATCTTTGGGCGGCAGGAAGTTGCAGCGGGAATGTAATTTTGATTTGAATGTCGAGGTGTGCGAAGATGTCAAGGAAACCCGCGGCGATGTTGCCAATGGCAATGGTATTTATGAGGCAAATGCCATATTGGGTAAGATGGGTCAGCTCCAAGGAGACATGACAAATCTTAATCAGAGATCTATGGAAGTTGATGATGTTCGTAGCGATTTGAATGAGGTTTCCAAAGATTTCACATCAGAGGTAGATCATGTTTCTGCCAACCATGCAGCTACAGATGCTTCTTTGTGTTCGATTGAAGGAAAGGAAGACAACGATAACAGAGGCGATATAGCAGCTGTTGGCTCTCTTCAGGTTTCAGATGTTGTTTCTTTGGAGACTCAGCAAATGGATAGTCCTTGTGAAGCTGGTTTAGTCGTAACTCATGAAGACCAAGAGGGGACAGGAAGTCTTAGCAAACAAGGAAGGGGTCGAAGGAAAAGAAGAAAAATAGCGGATGAACTAAATAATACCCCAGAGACAGGTTTAAGGAGGAGCTCTCGCCGGGCATTAGCTAGAAAACATGCTTCAAGCGTCATAGTGTCACTGGAGATGGATGATCCCATGGTGTCTGTGGAAACCAGTGCCATGGCAGAAGAAAAACCTGTAACTGTAATATCTGGTCATGAACAGTCCAAAATTTGTCAGGCGAAGTTGCAATTACCCCCTTCTTCCCAAAATTTAAATTTAGATGATGTTCCTGTTCTTGAAGTCTTTTCTATTTATGCTTGTTTAAGGTCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCTTTGAAGTCCGAAACCCCCAGTGTATTATTTGATAGCATTCATGTTTCTATTTTGGAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTATCCAATCTGCATCTGATTGTCTGAGGAATCTTAATTGGGATTTTCTGGACATTGTCACATGGCCTATTTTCATGGCCGAGTACCTTCTGATTCATGGTTCAGGATTTAAAACTAGCTTTAATCTTAACTACTCAAATTTCACAGCTGACTACTACAAACAACCTGTGAATGTGAAGGTTGGGATTCTTCAGTATCTCTGTGATGATATGATCGAAGCAGAAGCAATAAGGTCTGAGCTTAACAGGAGATCGTTGGTAACTGAGAACAGTGTTGGTTCTGATCAGAATATGTATTTTGACACTTGTAAGAAACGGAGAGCTGGAACAGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAAATTGCAGATGACACTGACTGGAACAGTGATGACTGCTACCTTTGCAAGATGGATGGTAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCCAAGTGTGTTGGAATTGCAAGTGACAATCTGCCTGAAGGGGACTGGTATTGCCCTGAGTGTGCAATTGGCACACACAGGGCATGGATGAAATCACGTAGGTCACTTCGAGGAGCAGATTTGATAGGGAGTGATATTCATGGCCGTCTTTATTTTAGCAGCTATGGTTACTTGTTAGTGTCGGACTCATCTGATGAGGGGTCTTTGTTCAATTACTACCACAGAAATGATCTACATTTAGTGATTGAAGCTTTAAAGTCTATGGATACTTCGTCCGGATGCTTAATAACGGCTATCTACAAGCATTGGGATATCCCTGCTAACCCAAGTGTGGAGACTAGTAACGTGGTCATCTTGAACCAAAGCTCCACCAAGAACCTTCGTGTGAAGGGTGAATCTTCTGCATTGAAGACATCTTTAGCTCCCATTACTTTTTCAGAAGCATGTTTGGTGAATAATCGTGTGGTTGATGAAAGAAAGTTAGATGAAAATTCTACAATTGACTGTTGTAATCATCCTGGCCAAGATTTTCCTAAAGCTGGGAATCGCTTGGATTCAGCAACAACTATAGAAAGTCCCTGTGCTGTTTCAGAAGGATCAGCTGATACCACACAAGTTAGACCAGGCATCGAGAATGTTCAAATGAATGGGCTTTACGATTCCAATAGATCTGATGAGTCCTTGAATCAGTCAGGGATACCGGAAAAACATCATCCAGTTGGTGACAGTTCTTTGGTATCATCTAGCTTAGATGTGGAACATAAGAGGAAATTAAGATCTGTGGATGCTAGTTGTGCCCAATTGCCTGAAGATAAGGATACCTCTGATGTGCCTTTTGGAATAGACTATGTAAACTATTATAGCTTTGCCCGAACGGCCTCATTAATTGCACATGAGTTGATGAGTAAGTCACCTGAAAAGATAAATAAGAATATTATATTGACTGAAGACGACATAATTTCAGAGCAAGTCAAGGCCATTATGAAGAAATCTACAAGCTTCTGCTGGCCAAGTATTCAAAACCTGCATGCAGCTGCCCAAAAGGAAAATTGTGGGTGGTGCTTTTCTTGCAAAGTTGCAAATGATGACAGGGATTGCTTGTTTAATTCTGTAATGAAGCCTGTTTGGGAAGTGTCTGAAAGTACTTTTGGTGGACTTCATCCCAGCAAGATCCAGAATGGACATCTCAGGGATATCATCTGTCATATTCTCTCCCTTGAGGATCGATTACGCGGGATTTTGTTGGGTCCATGGTTGAATTTACAACAAACTGATCTTTGGCATAAGGAGCTTATGAAGACCGGTGATCTTCGTCCTGCTAAAAAGTTATTGCTTATTTTGGAATCCAATTTGCGGCCTTTTGCTTTTGCAGCAGATTGGTTAAAGCATGTGGATTCTATTGGTACCATGGGATCAGCTATTCATTTTGTGGCCAGTTTACGCACAAGGCATGGTATTGGGAAGAAAAGGGCTAGGTTTTCTGATGCTGAACCCAATCCATCTTCAAACAATGCAAGCGGTTTGGGAATGTATTGGTGGAGAGGTGGTAAGCTTTCCCGGCAGTTGTTTAATTGCAAGAGTTTGCCCCGCTCATTGGTTGCCAAGGCTGCTAGACAAGGGGGTTGCTCAAAGATTCCAGGCATTTTGTATCCTGAAAATTCAGATTTTGCTAGGCGAAGCAAATGCATTGCATGGCGGGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTGTACAGGTTAGAGAGCTTTATTCAAACATAAAGTGGCGTGATATTGAAAATAGCCATTCTCAATATGTCTTGGACAAGGAATCTAGAAAAGCAGTTAGACTGTTCAAGAAAGCAATTGTACGCAGGAAGTCCACTGAAGGGAAATCTGTGAAGTACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCTGATGTTGTTACCAAACATGGTTCTGTGTTGGAAGAACCCTCAAGTGAGAGAAAAAAATATTGGCTGGAAGAATCTTATTTACCCATGCATCTTTTAAAGAATTTTGAGGAAAAAAGAATCATTCGGAAGTCCGATGTAAAGAAACTTGGGAAAACTATTGAGATTGGTAGAGTTAATAGGAAGGTTCCTCAACAAAGAGGATTTCCGTATTTGTTTTCTAGACTGGAAAGATCTGATTGTCATCAGTGTGGGCACTGCAACAAAGATGTTCCTATCAGGGATGCTGTGAGCTGCCAATATTGCAAAGGACATTTTCATAAGAAGCATGTAAGGAAATGTAGTGGCACAAGGGCTACTAAATGCACATATTCATGTCACAGATGCGAGGGTGGGATGCGTGCAAAGACTAAAACTAATTCAAAAAGAAAGAGAGTTGACTCTAAACAGCAGAAGGTTGAATCACAGACATGTAAAAATACTCCCTCAGTTAGTAAGTCGGTGAGCCTTAAAGGCAATAAAAGGGCTTTGAGTAAGGCACGGAAGGCAAAATCTCAAACTAATAAGAAGATCGCACCAAGTGTACCACTTCGTCGTTCTACTAGGAAGGCCAAATCCTTGTACATGTACAGTCAAATGAATGGAGGGCGGAAAAAAGGAATTCAAAGTAAAAAGAAAGTTGGACGTAAAAAGGGGAAGCAAAATAAATCAAAGAAGGCAAATAATCAGAAGCCGAAAGAAACTACTGCTCAGCAAGAGAAGTGTATGCCAACTACTGTTTGTAAGAAAAGAACAAACGTTTGTAGCAGCTACTGGCATAATGGTCTTTGGTTGTCTAGAAAGCCAAATGATGAACGGGTAGTGTTGTTTCGGGAAAAAAAGCATGTTTTCTCCTCTGAGGGTTTTTCTGCTGCCACTGATAATCCTAAATGCGGCATTTGTTCTGGAGATGGACCCGAATTGCATTATATTGCTTGTGACATATGTGGAGATTGGTATCATGGGGATGCTGTTGGGCTCACTGTAGAGAATTCCAGACAATTAATTGGATTTAAGTGTCATGTTTGTCTTCAAAGGCATGCTCCGATCTGCCCCCATATGACATGTAAAGCACTGTCTCTCACTGGAAACAGCACTAAAGAGTGTGCTGAGGAACTATCAAATTCTGTATCTCTCCAGTTTCCGACTGAGGTATGTTTGCCATATTTAAGCCCAAATTGTTGA 5190 0.4181 MMEFVGKIVKKEVKGVGFVTGTVKSYDPSSSFVEILYDNGDSEELESNEVVLLLQQAQPELAKPKTRVGRKPKKRRRVEKKAGAGDSSGNANGNLVLEVSEIRDNSEVNGELGLGIEEKLGNGNANANGSVESIVSDGTLGREIGVEGDLNLNKDVAVNGSCLRDELDLNSGINLNEDLNLNDGCGLLTFDGTEVGLKRRDCIDLNLDVNNDDDVSMNGGSLGGRKLQRECNFDLNVEVCEDVKETRGDVANGNGIYEANAILGKMGQLQGDMTNLNQRSMEVDDVRSDLNEVSKDFTSEVDHVSANHAATDASLCSIEGKEDNDNRGDIAAVGSLQVSDVVSLETQQMDSPCEAGLVVTHEDQEGTGSLSKQGRGRRKRRKIADELNNTPETGLRRSSRRALARKHASSVIVSLEMDDPMVSVETSAMAEEKPVTVISGHEQSKICQAKLQLPPSSQNLNLDDVPVLEVFSIYACLRSFSTLLFLSPFELEDLVAALKSETPSVLFDSIHVSILETLRKHLEYLSNEGIQSASDCLRNLNWDFLDIVTWPIFMAEYLLIHGSGFKTSFNLNYSNFTADYYKQPVNVKVGILQYLCDDMIEAEAIRSELNRRSLVTENSVGSDQNMYFDTCKKRRAGTDVSGGSCLTEEIADDTDWNSDDCYLCKMDGNLICCDGCPAAFHSKCVGIASDNLPEGDWYCPECAIGTHRAWMKSRRSLRGADLIGSDIHGRLYFSSYGYLLVSDSSDEGSLFNYYHRNDLHLVIEALKSMDTSSGCLITAIYKHWDIPANPSVETSNVVILNQSSTKNLRVKGESSALKTSLAPITFSEACLVNNRVVDERKLDENSTIDCCNHPGQDFPKAGNRLDSATTIESPCAVSEGSADTTQVRPGIENVQMNGLYDSNRSDESLNQSGIPEKHHPVGDSSLVSSSLDVEHKRKLRSVDASCAQLPEDKDTSDVPFGIDYVNYYSFARTASLIAHELMSKSPEKINKNIILTEDDIISEQVKAIMKKSTSFCWPSIQNLHAAAQKENCGWCFSCKVANDDRDCLFNSVMKPVWEVSESTFGGLHPSKIQNGHLRDIICHILSLEDRLRGILLGPWLNLQQTDLWHKELMKTGDLRPAKKLLLILESNLRPFAFAADWLKHVDSIGTMGSAIHFVASLRTRHGIGKKRARFSDAEPNPSSNNASGLGMYWWRGGKLSRQLFNCKSLPRSLVAKAARQGGCSKIPGILYPENSDFARRSKCIAWRAAVEMSTSVEQLAVQVRELYSNIKWRDIENSHSQYVLDKESRKAVRLFKKAIVRRKSTEGKSVKYLIDFGKRRAIPDVVTKHGSVLEEPSSERKKYWLEESYLPMHLLKNFEEKRIIRKSDVKKLGKTIEIGRVNRKVPQQRGFPYLFSRLERSDCHQCGHCNKDVPIRDAVSCQYCKGHFHKKHVRKCSGTRATKCTYSCHRCEGGMRAKTKTNSKRKRVDSKQQKVESQTCKNTPSVSKSVSLKGNKRALSKARKAKSQTNKKIAPSVPLRRSTRKAKSLYMYSQMNGGRKKGIQSKKKVGRKKGKQNKSKKANNQKPKETTAQQEKCMPTTVCKKRTNVCSSYWHNGLWLSRKPNDERVVLFREKKHVFSSEGFSAATDNPKCGICSGDGPELHYIACDICGDWYHGDAVGLTVENSRQLIGFKCHVCLQRHAPICPHMTCKALSLTGNSTKECAEELSNSVSLQFPTEVCLPYLSPNC* 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1288 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1625 1686 IPR013083 -
Amo13g1288 1729 SUPERFAMILY FYVE/PHD zinc finger 648 710 IPR011011 -
Amo13g1288 1729 MobiDBLite consensus disorder prediction 363 400 - -
Amo13g1288 1729 Pfam DDT domain 469 520 IPR018501 -
Amo13g1288 1729 ProSitePatterns Zinc finger PHD-type signature. 661 702 IPR019786 -
Amo13g1288 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 723 IPR013083 -
Amo13g1288 1729 CDD PHD2_CHD_II 661 702 - -
Amo13g1288 1729 SMART testlast3 464 524 IPR018501 -
Amo13g1288 1729 Pfam PHD-finger 661 703 IPR019787 -
Amo13g1288 1729 MobiDBLite consensus disorder prediction 62 92 - -
Amo13g1288 1729 MobiDBLite consensus disorder prediction 900 927 - -
Amo13g1288 1729 ProSiteProfiles DDT domain profile. 464 524 IPR018501 -
Amo13g1288 1729 MobiDBLite consensus disorder prediction 1541 1561 - -
Amo13g1288 1729 MobiDBLite consensus disorder prediction 1475 1494 - -
Amo13g1288 1729 PANTHER PHD FINGER FAMILY PROTEIN 2 1695 - -
Amo13g1288 1729 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 2 1695 - -
Amo13g1288 1729 SUPERFAMILY FYVE/PHD zinc finger 1623 1683 IPR011011 -
Amo13g1288 1729 ProSiteProfiles Zinc finger PHD-type profile. 658 705 IPR019787 -
Amo13g1288 1729 MobiDBLite consensus disorder prediction 1457 1573 - -
Amo13g1288 1729 SMART PHD_3 660 703 IPR001965 -
Amo13g1288 1729 SMART PHD_3 1632 1679 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1288 Amo-Chr13 16748612 16759148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1288 2 1689 PHD Transcription Factor Family AT5G12400 40.291 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Amo13g1288 DDT 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1288 - - gmx:100800973 2128.6